GEO DataSets

(Submitter supplied) Although proteins and peptides encoded in small open reading frames (ORFs < 100 AA) in microbial genomes can play critical roles as toxins, bacteriocins, transcriptional regulators, signaling molecules, and chaperones, many such ORFs remain annotated as “hypothetical proteins”. In the genome of the hyperthermophilic bacterium, Thermotoga maritima, nearly 2/3 of the 167 small ORFs have no known function. more...

Organism:

Thermotoga sp. RQ2; Thermotoga neapolitana; Thermotoga petrophila; Thermotoga maritima

Type:

Expression profiling by array

Platform:

GPL13655

4 Samples

Download data: GPR, TXT

(Submitter supplied) Hyperthermophilic bacteria of the genus Thermotoga are known to utilize a wide range of simple and complex polysaccharides. T. maritima's transcriptional response to a variety of mono- and poly-saccharides was previously studied to assign functions to genes involved in carbohydrate uptake and utilization. To compare and contrast closely-related members of the Thermotoga genus, a four-species microarray was developed by expanding a whole genome T. more...

Organism:

Thermotoga neapolitana; Thermotoga petrophila; Thermotoga sp. RQ2; Thermotoga maritima

Type:

Expression profiling by array

Platform:

GPL13655

4 Samples

Download data: CSV, GPR

(Submitter supplied) Because some probes were designed based on SSH results, some probes duplicate the same ORF or cover intergenic DNA. Here is a key for the notation used for probe names: TRQ2_0171a means there is more than one probe for this ORF, TRQ2_1842-1843 means this probe covers part of 1842 as well as part of 1843 and any intergenic DNA in between, TRQ2_1803-1820739-1820933 means that this probe covers the genome coordinates listed. more...

Organism:

Thermotoga maritima; Thermotoga neapolitana; Thermotoga petrophila; Thermotoga sp. RQ2

2 Series

8 Samples

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