txid215358[Organism] - GEO DataSets

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Select item 2002691241.

Single-cell transcriptome unravels spermatogonial stem cells and dynamic heterogeneity of spermatogenesis in seasonal breeding teleost

(Submitter supplied) We characterized spermatogenesis in the large yellow croaker (Larimichthys crocea), a marine fish of significant commercial value, based on a high-resolution single-cell RNA-seq atlas of testicular cells from three distinct developmental stages- juvenile, adult differentiating and regressed testes. We detailed continuous developmental trajectory of spermatogenic cells, from spermatogonia to spermatids, elucidating the molecular events involved in spermatogenesis. more...

Organism:: Larimichthys crocea

Type:: Expression profiling by high throughput sequencing

Platform:: GPL20937
3 Samples

Download data: MTX, TSV

Series

Accession:: GSE269124

ID:: 200269124

Select item 2002129042.

Induced differentiation of large yellow croaker muscle satellite cells

(Submitter supplied) Traditional differentiation of myoblasts is usually induced by serum starvation method, in which 2%HS is used to induce myoblasts to differentiate into myotubes. But, traditional serum starvation method is difficult to differentiate large yellow croaker muscle satellite cells efficiently. Although myotubes were induced within 2-3 days with medium containing 2% horse serum (HS), they detached shortly and died soon after. more...

Organism:: Larimichthys crocea

Type:: Expression profiling by high throughput sequencing

Platform:: GPL30112
9 Samples

Download data: CSV

Series

Accession:: GSE212904

ID:: 200212904

PubMed Full text in PMC Similar studies

Select item 2001860123.

lncRNAs expression in the liver of large yellow croaker fed with fish oil, soybean oil, olive oil, and palm oil diets

(Submitter supplied) To investigate the role of lncRNAs on lipid metabolism, we did RNAseq to find the difference among large yellow croaker fed with fish oil (FO), soybean oil (SO), olive oil (OO), and palm oil (PO) diets

Organism:: Larimichthys crocea

Type:: Expression profiling by high throughput sequencing; Non-coding RNA profiling by high throughput sequencing

Platform:: GPL30869
12 Samples

Download data: TXT

Series

Accession:: GSE186012

ID:: 200186012

PubMed Full text in PMC Similar studies SRA Run Selector

Select item 2001742214.

Comparative Transcriptome Analysis Reveals immunoregulation mechanism of lncRNA-mRNA in Large Yellow Croaker (Larimichthys crocea) in Response to Cryptocaryon irritans Infection

(Submitter supplied) Cryptocaryonosis caused by Cryptocaryon irritans is one of the major diseases of large yellow croaker (Larimichthys crocea), which lead to massive economic losses annually. The pathogenesis for cryptocaryonosis has been researched by a series of transcriptome studies under different infection conditions. However, little is known about the roles of tissue-specifically expressed genes during the infection of C. more...

Organism:: Larimichthys crocea

Type:: Expression profiling by high throughput sequencing

Platform:: GPL30112
15 Samples

Download data: TXT

Series

Accession:: GSE174221

ID:: 200174221

PubMed Full text in PMC Similar studies SRA Run Selector

Select item 2001136565.

HiSeq of small RNA in muscle of large yellow croaker

(Submitter supplied) We obtained the credible target sequences by filtrating high-throughput profiling of muscle tissue in large yellow croaker.The goal of this study is to measured almost all small RNA in muscle not only at the common feeding but also during the fasting period. We set the data of microRNA as a mainspring of study. By bioinformatics analysis, all possible target binding site were compared and predicted in both known and unknown.

Organism:: Larimichthys crocea

Type:: Non-coding RNA profiling by high throughput sequencing; Other

Platform:: GPL24934
2 Samples

Download data: TXT

Series

Accession:: GSE113656

ID:: 200113656

SRA Run Selector

Select item 2000732916.

Muscle transcriptome analysis of the large yellow croaker under fasting treatment by RNA-seq

(Submitter supplied) We sequenced mRNA from 2 muscle samples of the large yellow croaker (Larimichthys crocea) taken from normal feeding fish and fasting stress treatment fish, respectively, to investigate the transcriptome and comparative expression profiles of the large yellow croaker muscle undergoing fasting.

Organism:: Larimichthys crocea

Type:: Expression profiling by high throughput sequencing; Other

Platform:: GPL20937
2 Samples

Download data: TXT, VCF

Series

Accession:: GSE73291

ID:: 200073291

SRA Run Selector

Select item 2000677567.

Liver transcriptome analysis of the large yellow croaker under fasting or temperature treatment by RNA-seq

(Submitter supplied) We sequenced mRNA from 4 liver samples of the large yellow croaker (Larimichthys crocea) taken from thermal stress treatment fish, normal temperature treatment fish, cold stress treatment fish and fasting stress treatment fish, respectively, to investigate the transcriptome and comparative expression profiles of the large yellow croaker liver undergoing thermal stress, cold stress and fasting.