GEO DataSets

(Submitter supplied) We report a complex operon architecture for R. capsulatus: operons with multiple TSSs and TTSs, genomic regions of high transcriptional activity and novel transcripts. In addition, we present a new 5' and 3' targeted sequencing method for the Ion Torrent PGM. TEX+ and TEX- indicates if the dRNA-seq library was treated with Terminator 5'-Phosphate-Dependent Exonuclease or not. Treatment with TEX degrades every RNA that does not have a 5'-PPP.

Organism:

Rhodobacter capsulatus SB 1003; Rhodobacter capsulatus DE442

Type:

Expression profiling by high throughput sequencing; Other

Platforms:

GPL25365 GPL25364

18 Samples

Download data: BED

(Submitter supplied) Gene Transfer Agents (GTAs) are small virus-like particles that transfer random fragments of host bacterial DNA between cells. Unlike true viruses, whose primary aim is self-preservation, GTAs have no preference for the spread of their own genes. GTAs are typically produced from less than 1% of the population, making in-depth analysis of producer cells problematic. Here, we compared the transcriptome of wild-type R. more...

Organism:

Rhodobacter capsulatus SB 1003; Rhodobacter capsulatus DE442

Type:

Expression profiling by high throughput sequencing

Platforms:

GPL25420 GPL25421

12 Samples

Download data: TXT