GEO DataSets

(Submitter supplied) Seed germination triggers a transition of growth and metabolic activities from quiescent to active statuses. Germinating seeds is a good system to study many biological and biochemical processes including hormone metabolic activities and cell wall biosynthesis. Next generation sequence technology is used to study these processes. We have examined gene transcription activities and alternative splicing events in germinating embryos

Organism:

Hordeum vulgare subsp. vulgare

Type:

Expression profiling by high throughput sequencing

Platform:

GPL19798

8 Samples

Download data: FA, TXT, XLS, XLSX

(Submitter supplied) Canola (oilseed rape, Brassica napus L.), is susceptible to infection by the biotrophic protist Plasmodiophora brassicae, the causal agent of clubroot. To understand the roles of microRNAs (miRNAs) during the post-transcriptional regulation of disease initiation and progression, we have characterized the changes in miRNA expression profiles in canola roots during clubroot disease development and have compared these to uninfected roots. more...

Organism:

Pinus taeda; Liriodendron tulipifera; Phaseolus vulgaris; Ipomoea batatas; Lactuca sativa; Oryza rufipogon; Oryza nivara; Sorghum bicolor; Rorippa indica; Prunus salicina; Populus tremula; Malcolmia maritima; Picea sitchensis; Brassica napus; Lupinus luteus; Phaseolus coccineus; Manihot esculenta; Ricinus communis; Oryza brachyantha; Cenchrus americanus; Phleum pratense; Panicum virgatum; Nuphar advena; Physcomitrium patens; Persea americana; Populus trichocarpa x Populus deltoides; Malus domestica; Nicotiana sylvestris; Nicotiana tabacum; Petunia x hybrida; Oryza sativa; Lolium arundinaceum; Lotus japonicus; Cenchrus ciliaris; Populus tremula x Populus tremuloides; Nasturtium officinale; Picea glauca; Populus tremuloides; Populus trichocarpa; Prunus persica; Medicago truncatula; Nicotiana benthamiana; Hordeum vulgare; Ipomoea nil; Prunus armeniaca; Peridictyon sanctum; Oryza barthii; Hordeum vulgare subsp. vulgare; Oenocarpus bataua

Type:

Non-coding RNA profiling by array

Platform:

GPL17805

4 Samples

Download data: TXT

(Submitter supplied) There is growing evidence for the prevalence of DNA copy number variation (CNV) and its role in phenotypic variation in recent years. Comparative genomic hybridization (CGH) was used to explore the extent of this type of structural variation in the barley genome. In a panel of 14 genotypes including domesticated cultivars and wild barleys, we found that 14.9% of all the sequences on the array are affected by CNV. more...

Organism:

Hordeum vulgare subsp. vulgare

Type:

Genome variation profiling by genome tiling array

Platform:

GPL16680

19 Samples

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(Submitter supplied) plant miRNA microarray with 100% coverage of mature plant miRNAs listed in miRBase version 15.0. Arrays are made based µParaflo microfluidic technology (Atactic Technologies). On the µParaflo microfluidic chip, each detection probe consists of a chemically modified nucleotide coding segment complementary to target microRNA (from miRBase, http://miRBase.org) or other RNA (control or customer defined sequences) and a spacer segment of polyethylene glycol to extend the coding segment away from the substrate. more...

Organism:

Physcomitrium patens; Picea glauca; Picea sitchensis; Pinus taeda; Liriodendron tulipifera; Persea americana; Populus tremuloides; Populus trichocarpa; Populus trichocarpa x Populus deltoides; Malus domestica; Prunus persica; Lupinus luteus; Medicago truncatula; Phaseolus vulgaris; Phaseolus coccineus; Manihot esculenta; Ricinus communis; Nicotiana sylvestris; Nicotiana tabacum; Nicotiana benthamiana; Petunia x hybrida; Ipomoea batatas; Lactuca sativa; Hordeum vulgare; Oryza rufipogon; Oryza sativa; Oryza brachyantha; Oryza nivara; Cenchrus americanus; Sorghum bicolor; Lolium arundinaceum; Phleum pratense; Lotus japonicus; Cenchrus ciliaris; Ipomoea nil; Prunus armeniaca; Peridictyon sanctum; Panicum virgatum; Populus tremula x Populus tremuloides; Rorippa indica; Oryza barthii; Nasturtium officinale; Nuphar advena; Prunus salicina; Hordeum vulgare subsp. vulgare; Populus tremula; Oenocarpus bataua; Malcolmia maritima

1 Series

4 Samples

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(Submitter supplied) Annotation in this record based on whole genome shotgun (WGS) assembly of barley cv. Morex (Assembly1, EMBL-EBI accession no. PRJNA30763). Probes designed to 200 bp contigs where 10 non-repetitive and unique probes could be design. Contigs at minimum spacing of 500 bp apart. Protocol: see manufacturer's web site www.nimblegen.com

Organism:

Hordeum vulgare subsp. vulgare

1 Series

19 Samples

Download data: NCD, NDF, POS