txid101364[Organism] - GEO DataSets

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Select item 2002560521.

Trematode DIPLOSTOMUM PSEUDOSPATHACEUM INDUCING DIFFERENTIAL GENE EXPRESSION IN SEXUAL AND GYNOGENETIC GIBEL CARP (Carassius gibelio): PARASITES FACILITATING THE COEXISTENCE OF TWO REPRODUCTIVE FORMS of the invasive species

(Submitter supplied) Parasite-mediated selection is considered one of the potential mechanisms contributing to the coexistence of asexual-sexual complexes. Gibel carp (Carassius gibelio), an invasive fish species in Europe, often forms populations composed of gynogenetic and sexual specimens. In the present study, experimental infection was induced in gynogenetic and sexual gibel carp using eye-fluke Diplostomum pseudospathaceum (Trematoda), and the transcriptome profile of the spleen as a major immune organ in fish was analyzed to reveal the differentially expressed immunity-associated genes related to D. more...

Organism:: Carassius gibelio

Type:: Expression profiling by high throughput sequencing

Platform:: GPL34210
18 Samples

Download data: TXT

Series

Accession:: GSE256052

ID:: 200256052

PubMed Full text in PMC Similar studies

Select item 2002540102.

Reproduction-associated pathways in females of gibel carp (Carassius gibelio) shed light on the molecular mechanisms of the coexistence of asexual and sexual reproduction

(Submitter supplied) Gibel carp (Carassius gibelio) is a cyprinid fish that originated in eastern Eurasia and is considered as invasive in European freshwater ecosystems. The populations of gibel carp in Europe are mostly composed of asexually reproducing triploid females (i.e., reproducing by gynogenesis) and sexually reproducing diploid females and males. Although some cases of coexisting sexual and asexual reproductive forms are known in vertebrates, the molecular mechanisms maintaining such coexistence are still in question. more...

Organism:: Carassius auratus; Carassius gibelio; Cyprinus carpio

Type:: Expression profiling by high throughput sequencing

Platforms:: GPL34123 GPL25715 GPL34122
38 Samples

Download data: TSV, TXT

Series

Accession:: GSE254010

ID:: 200254010

PubMed Full text in PMC Similar studies

Select item 2002400313.

Heterosis versus breakdown in cyprinid hybrids associated with SVCV infection revealed by transcriptome profile analysis of head kidney

(Submitter supplied) Whilst the hybrids of F1 generations usually experience heterosis for fitness-related traits (including the resistance to parasites), post-F1 generations, due to Dobzhansky–Muller genetic incompatibilities, express numerous disadvantageous traits (including susceptibility to parasites). Genetic disruption in hybrids may also result from the broken system of cyto-nuclear coadaptation. Maternal backcrosses (each parent having with the same mtDNA of parents) and paternal backcrosses (each parent having with different mtDNA of parents) have the same nuclear genetic compositions, but differ in cytoplasmic genetic elements, affecting their viability and survival. more...

Organism:: Carassius gibelio x Cyprinus carpio 'xingguonensis'; Cyprinus carpio; Carassius gibelio

Type:: Expression profiling by high throughput sequencing

Platforms:: GPL33643 GPL33644 GPL32013
70 Samples

Download data: TSV

Series

Accession:: GSE240031

ID:: 200240031

Select item 2001977414.

Histopathology and transcriptome analysis reveals the gills mucosa injury and immunotoxicity in gibel carp following acute deltamethrin exposure

(Submitter supplied) More and more evidence prove that deltamethrin (Del) exposure induced the adverse effect and damaged immune function to the aquatic animals in the parasite killing process with increasing insecticide application. However, little is currently known of the negative effect on mucosal immunity, especially in gills tissue. In this study, the LC50 of deltamethrin on gibel carp at 96h was determined to be 6.194 μg/L, and then juvenile gibel carp (Carassius auratus gibelio) (8.8 ± 1.0 g) were exposed to four Del exposure groups (0.61, 1.22, 2.44, and 4.88 μg/L) for 12h and 24h. more...

Organism:: Carassius gibelio

Type:: Expression profiling by high throughput sequencing

Platform:: GPL32013
6 Samples

Download data: XLS

Series

Accession:: GSE197741

ID:: 200197741

Select item 2001065515.

Physiological and transcriptomic responses to fishmeal-based diet and rapeseed meal-based diet in two strains of gibel carp (Carassius gibelio)

(Submitter supplied) This study was conducted to investigate the effects of the rapeseed meal (RM) on two strains of gibel carp (A strain and F strain) and to explore whether two strains show the different molecular mechanisms to the fishmeal (FM) and rapeseed meal (RM). Transcriptomic analysis showed that amino acid metabolism, lipid metabolism and digestive system were three main biological processes affected by RM diet in both strains. more...

Organism:: Carassius gibelio

Type:: Expression profiling by high throughput sequencing

Platform:: GPL28197
4 Samples

Download data: FASTA, TXT

Series

Accession:: GSE106551

ID:: 200106551

PubMed Similar studies SRA Run Selector

Select item 2000906266.

Integrated analysis of mRNA and viral miRNA expression profiles in the kidney of Carassius auratus gibelio response to cyprinid herpesvirus 2

(Submitter supplied) MiRNAs are small non-coding single stranded RNAs that play crucial roles in numerous biological processes. Vertebrate herpesviruses encode multiple viral miRNAs that modulate host and viral genes. However, the roles of viral miRNAs in invertebrates have not been fully determined. Here, we used high-throughput sequencing to analyse miRNA and mRNA expression proﬁles of Carassius auratus gibelio in response to infection by cyprinid herpesvirus 2 (CyHV-2). more...