GEO DataSet Links for PMC (Select 7985518) - GEO DataSets

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Links from PMC

Items: 12

Select item 2001575141.

mRNA-seq in VDR knockout and control THP-1 cells

(Submitter supplied) The vitamin D receptor (VDR) has been knocked out in monocytic THP-1 cells after stimulation of ko and control cells with the the natural VDR ligand 1,25-dihydroxyvitamin D3 (1,25(OH)2D3), quadruplicate mRNA-seq has been performed

Organism:: Homo sapiens

Type:: Expression profiling by high throughput sequencing

Platform:: GPL18573
32 Samples

Download data: XLSX

Series

Accession:: GSE157514

ID:: 200157514

PubMed Full text in PMC Similar studies Analyze with GEO2R SRA Run Selector

Select item 2001572092.

ETS1 ChIP-seq in human monocytic THP-1 cells

(Submitter supplied) ChIP-seq for ETS1 in THP-1 cells after stimulation with the the natural VDR ligand 1,25-dihydroxyvitamin D3 (1,25(OH)2D3)

Organism:: Homo sapiens

Type:: Genome binding/occupancy profiling by high throughput sequencing

Platform:: GPL11154
4 Samples

Download data: TDF

Series

Accession:: GSE157209

ID:: 200157209

PubMed Full text in PMC Similar studies SRA Run Selector

Select item 2001240323.

Effects of vitamin D on CEBPA binding in THP-1 cells

(Submitter supplied) Three independent repeats of ChIP-seq or ChIPmentation with THP-1 cells after treatment with either 1,25(OH)2D3 (VD) or control (EtOH) using antibody against CEBPA (3 time points).

Organism:: Homo sapiens

Type:: Genome binding/occupancy profiling by high throughput sequencing

Platform:: GPL11154
18 Samples

Download data: TDF, TXT

Series

Accession:: GSE124032

ID:: 200124032

PubMed Full text in PMC Similar studies SRA Run Selector

Select item 2001195564.

The pioneer factor CEBPA modulates vitamin D signaling

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.

Organism:: Homo sapiens

Type:: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing

Platform:: GPL11154
43 Samples

Download data: BED, TDF, TXT

Series

Accession:: GSE119556

ID:: 200119556

PubMed Full text in PMC Similar studies

Select item 2001195555.

Effects of vitamin D on histone modification H3K4me3 in THP-1 cells

(Submitter supplied) Three independent repeats of ChIP-seq from THP-1 after 2h and 8h treatment with 1,25D or EtOH (control), using antibody against histone marker H3K4me3.

Organism:: Homo sapiens

Type:: Genome binding/occupancy profiling by high throughput sequencing

Platform:: GPL11154
13 Samples

Download data: BED, TDF

Series

Accession:: GSE119555

ID:: 200119555

PubMed Full text in PMC Similar studies SRA Run Selector

Select item 2001195516.

Effects of transcription factor CEBPA knockdown on vitamin D target gene regulation in THP-1 cells

(Submitter supplied) Three independent repeats of siRNA knockdown of CEBPA, followed by 24h vitamin D treatment, RNA extraction and RNA-seq.

Organism:: Homo sapiens

Type:: Expression profiling by high throughput sequencing

Platform:: GPL11154
12 Samples

Download data: CSV

Series

Accession:: GSE119551

ID:: 200119551

PubMed Full text in PMC Similar studies Analyze with GEO2R SRA Run Selector

Select item 2001078517.

Effects of vitamin D on histone modifications H3K27ac and H3K4me3 in THP-1 cells

(Submitter supplied) Three independent repeats of ChIP-seq from THP-1 after 24h treatment with 1,25D or EtOH (control), using antibodies against histone markers H3K27ac and H3K4me3

Organism:: Homo sapiens

Type:: Genome binding/occupancy profiling by high throughput sequencing

Platform:: GPL11154
13 Samples

Download data: TDF

Series

Accession:: GSE107851

ID:: 200107851

PubMed Full text in PMC Similar studies SRA Run Selector

Select item 2000894318.

VDR ChIP-seq in human monocytic THP-1 cells

(Submitter supplied) ChIP-seq for VDR in THP-1 cells after stimulation with the the natural VDR ligand 1,25-dihydroxyvitamin D3 (1,25(OH)2D3)

Organism:: Homo sapiens

Type:: Genome binding/occupancy profiling by high throughput sequencing

Platform:: GPL11154
12 Samples

Download data: TDF

Series

Accession:: GSE89431

ID:: 200089431

PubMed Full text in PMC Similar studies SRA Run Selector

Select item 2000699629.

CTCF ChIP-seq in human monocytic THP-1 cells with replicates (4)

(Submitter supplied) ChIP-seq for the insulator protein CTCF in THP-1 cells after stimulation with the the natural VDR ligand 1,25-dihydroxyvitamin D3 (1,25(OH)2D3)