Similar studies for GEO DataSets (Select 200266783) - GEO DataSets

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Items: 20

Select item 2002667831.

Members of an array of zinc finger proteins specify distict Hox chromatin boundaries [ChIP-seq]

(Submitter supplied) In this experiment, we sought to identify how the distribution of RAD21 and ZNF263 change in WT, PATZ1 KO, and ZNF263 KO cells during differentiation of mouse embryonic stem cells (ESCs) into cervical motor neurons (MNs).

Organism:: Mus musculus

Type:: Genome binding/occupancy profiling by high throughput sequencing

Platform:: GPL34328
7 Samples

Download data: BW

Series

Accession:: GSE266783

ID:: 200266783

PubMed Similar studies

Select item 2002668492.

Members of an array of zinc finger proteins specify distict Hox chromatin boundaries [Micro-C]

(Submitter supplied) In this experiment, we sought to identify how genome organization change in WT versus PATZ1 KO cells during differentiation of mouse embryonic stem cells (ESCs) into cervical motor neurons (MNs).

Organism:: Mus musculus

Type:: Other

Platform:: GPL34328
4 Samples

Download data: HIC, TXT

Series

Accession:: GSE266849

ID:: 200266849

PubMed Similar studies

Select item 2002304823.

Members of an array of zinc finger proteins specify distinct Hox chromatin boundaries

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.

Organism:: Mus musculus

Type:: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Other

Platforms:: GPL34328 GPL24247
57 Samples

Download data: BW, HIC, NARROWPEAK, TXT

Series

Accession:: GSE230482

ID:: 200230482

PubMed Similar studies

Select item 2002304814.

Members of an array of zinc finger proteins specify distinct Hox chromatin boundaries [ChIP-Seq2]

(Submitter supplied) In this experiment, we sought to identify how the distribution of CTCF, MAZ, and RAD21 change in CTCF-degron (no auxin), CTCF-degron (auxin), CTCF-degron MAZ KO (no auxin), and CTCF-degron MAZ KO (auxin) backgrounds in mouse embryonic stem cells (ESCs).

Organism:: Mus musculus

Type:: Genome binding/occupancy profiling by high throughput sequencing

Platform:: GPL24247
20 Samples

Download data: BW, NARROWPEAK

Series

Accession:: GSE230481

ID:: 200230481

PubMed Similar studies

Select item 2002304795.

Members of an array of zinc finger proteins specify distinct Hox chromatin boundaries [ChIP-Seq1]

(Submitter supplied) In this experiment, we sought to identify how the distribution of CTCF, MAZ, PATZ1, RAD21 change in WT and PATZ1 KO mouse embryonic stem cells (ESCs).

Organism:: Mus musculus

Type:: Genome binding/occupancy profiling by high throughput sequencing

Platform:: GPL24247
16 Samples

Download data: BW

Series

Accession:: GSE230479

ID:: 200230479

PubMed Similar studies

Select item 2002304786.

Members of an array of zinc finger proteins specify distinct Hox chromatin boundaries [RNA-Seq2]

(Submitter supplied) In this experiment, we sought to analyze how transcriptome of WT and PATZ1 knock-out (KO) cells change during differentiation of mouse embryonic stem cells (ESCs) into cervical motor neurons (MNs)

Organism:: Mus musculus

Type:: Expression profiling by high throughput sequencing

Platform:: GPL24247
4 Samples

Download data: TXT

Series

Accession:: GSE230478

ID:: 200230478

PubMed Similar studies

Select item 2002304777.

Members of an array of zinc finger proteins specify distinct Hox chromatin boundaries [RNA-Seq1]

(Submitter supplied) In this experiment, we sought to analyze how transcriptome of WT and PATZ1 knock-out (KO) cells change in mouse embryonic stem cells (ESCs)

Organism:: Mus musculus

Type:: Expression profiling by high throughput sequencing

Platform:: GPL24247
6 Samples

Download data: TXT

Series

Accession:: GSE230477

ID:: 200230477

PubMed Similar studies

Select item 2001924378.

CRISPR and biochemical screens Identify MAZ as a co-factor in CTCF-mediated insulation at Hox Clusters [CRISPR_set9]

(Submitter supplied) In this experiment, we sought to analyze the genes positively or negatively selected during differentiation of mouse embryonic stem cells (ESCs) into cervical motor neurons (MNs) with particular focus on the genes enriched for CTCF boundary disruption at HoxA cluster

Organism:: Mus musculus

Type:: Other

Platform:: GPL19057
6 Samples

Download data: TXT

Series

Accession:: GSE192437

ID:: 200192437

PubMed Full text in PMC Similar studies SRA Run Selector

Select item 2001924359.

CRISPR and biochemical screens Identify MAZ as a co-factor in CTCF-mediated insulation at Hox Clusters [CRISPR_set8]

Organism:: synthetic construct; Mus musculus

Type:: Other

Platforms:: GPL19057 GPL17769
13 Samples

Download data: TXT

Series

Accession:: GSE192435

ID:: 200192435

PubMed Full text in PMC Similar studies SRA Run Selector

Select item 20019243010.

CRISPR and biochemical screens Identify MAZ as a co-factor in CTCF-mediated insulation at Hox Clusters [ChIP-seq_set7]

(Submitter supplied) In this experiment, we sought to identify the distribution of RAD21 in cervical motor neurons (MNs) that is formed through in vitro differentiation of mESCs.

Organism:: Mus musculus

Type:: Genome binding/occupancy profiling by high throughput sequencing

Platform:: GPL21103
1 Sample

Download data: BW

Series

Accession:: GSE192430

ID:: 200192430

PubMed Full text in PMC Similar studies SRA Run Selector

Select item 20019242611.

CRISPR and biochemical screens Identify MAZ as a co-factor in CTCF-mediated insulation at Hox Clusters [ChIP-seq_set6]

(Submitter supplied) In this experiment, we sought to identify how the distribution of CTCF and MAZ change in WT and MAZ knock-out (KO) cells during differentiation of mouse embryonic stem cells (ESCs) into cervical motor neurons (MNs)

Organism:: Mus musculus

Type:: Genome binding/occupancy profiling by high throughput sequencing

Platforms:: GPL19057 GPL21103
18 Samples

Download data: BW, NARROWPEAK

Series

Accession:: GSE192426

ID:: 200192426

PubMed Full text in PMC Similar studies SRA Run Selector

Select item 20019099112.

CRISPR and biochemical screens Identify MAZ as a co-factor in CTCF-mediated insulation at Hox Clusters

(Submitter supplied) In this experiment, we sought to identify how the distribution of MAZ change in WT, MAZ HoxA(Δ5|6), and MAZ HoxD(Δ4|8) cells during differentiation of mouse embryonic stem cells (ESCs) into cervical motor neurons (MNs)

Organism:: Mus musculus

Type:: Genome binding/occupancy profiling by high throughput sequencing

Platforms:: GPL19057 GPL24247
11 Samples

Download data: BW

Series

Accession:: GSE190991

ID:: 200190991

PubMed Full text in PMC Similar studies SRA Run Selector

Select item 20019099013.

CRISPR and biochemical screens Identify MAZ as a co-factor in CTCF-mediated insulation at Hox Clusters [ChIP-seq_set4]

(Submitter supplied) In this experiment, we sought to identify how the distribution of H3K27me3 and H3K4me3 change in WT, MAZ HoxA(delta5|6), MAZ HoxD(delta4|8), and CTCF (delta5|6:6|7) cells during differentiation of mouse embryonic stem cells (ESCs) into cervical motor neurons (MNs)

Organism:: Mus musculus

Type:: Genome binding/occupancy profiling by high throughput sequencing

Platforms:: GPL19057 GPL21103
12 Samples

Download data: BW

Series

Accession:: GSE190990

ID:: 200190990

PubMed Full text in PMC Similar studies SRA Run Selector

Select item 20019098914.

CRISPR and biochemical screens Identify MAZ as a co-factor in CTCF-mediated insulation at Hox Clusters [ChIP-seq_set3]

(Submitter supplied) In this experiment, we sought to identify how the distribution of CTCF change in WT, MAZ HoxA(Δ5|6), MAZ HoxD(Δ4|8), and CTCF (Δ5|6:6|7) cells during differentiation of mouse embryonic stem cells (ESCs) into cervical motor neurons (MNs).

Organism:: Mus musculus

Type:: Genome binding/occupancy profiling by high throughput sequencing

Platforms:: GPL19057 GPL21103
16 Samples

Download data: BW, NARROWPEAK

Series

Accession:: GSE190989

ID:: 200190989

PubMed Full text in PMC Similar studies SRA Run Selector

Select item 20019098815.

CRISPR and biochemical screens Identify MAZ as a co-factor in CTCF-mediated insulation at Hox Clusters [4C-seq_set2]

(Submitter supplied) In this experiment, we sought to identify how topological organization changes at HoxA cluster in WT, MAZ HoxA(Δ5|6) and CTCF (Δ5|6:6|7) cells during differentiation of mouse embryonic stem cells (ESCs) into cervical motor neurons (MNs).

Organism:: Mus musculus

Type:: Other

Platform:: GPL24247
17 Samples

Download data: BEDGRAPH

Series

Accession:: GSE190988

ID:: 200190988

PubMed Full text in PMC Similar studies SRA Run Selector

Select item 20019098716.

CRISPR and biochemical screens Identify MAZ as a co-factor in CTCF-mediated insulation at Hox Clusters [CUT&RUN_set1]

(Submitter supplied) In this experiment, we sought to identify how the distribution of CTCF, RAD21, H3K27me3 and H3K4me3 change in WT and double-positive MAZ HoxA(Δ5|6) cervical motor neurons (MNs).

Organism:: Mus musculus

Type:: Genome binding/occupancy profiling by high throughput sequencing

Platform:: GPL24247
12 Samples

Download data: BW

Series

Accession:: GSE190987

ID:: 200190987

PubMed Full text in PMC Similar studies SRA Run Selector

Select item 20015713917.

CRISPR and biochemical screens identify MAZ as a co-factor in CTCF-mediated insulation at Hox clusters

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.

Organism:: synthetic construct; Mus musculus

Type:: Expression profiling by high throughput sequencing; Other; Genome binding/occupancy profiling by high throughput sequencing

4 related Platforms
138 Samples

Download data: BEDGRAPH, BW, HIC, NARROWPEAK, TXT

Series

Accession:: GSE157139

ID:: 200157139

PubMed Full text in PMC Similar studies

Select item 20015713818.

CRISPR and biochemical screens identify MAZ as a co-factor in CTCF-mediated insulation at Hox clusters [MAZ motif deletion RNA-seq]

(Submitter supplied) In this experiment, we sought to analyze how transcriptome of WT and Maz HoxA(Δ5|6) cells change during differentiation of mouse embryonic stem cells (ESCs) into cervical motor neurons (MNs)

Organism:: Mus musculus

Type:: Expression profiling by high throughput sequencing

Platform:: GPL24247
12 Samples

Download data: TXT

Series

Accession:: GSE157138

ID:: 200157138

PubMed Full text in PMC Similar studies SRA Run Selector

Select item 20015713719.

CRISPR and biochemical screens identify MAZ as a co-factor in CTCF-mediated insulation at Hox clusters [MAZ KO]

(Submitter supplied) In this experiment, we sought to analyze how transcriptome of WT and MAZ knock-out (KO) cells change during differentiation of mouse embryonic stem cells (ESCs) into cervical motor neurons (MNs)

Organism:: Mus musculus

Type:: Expression profiling by high throughput sequencing

Platform:: GPL21103
12 Samples

Download data: TXT

Series

Accession:: GSE157137

ID:: 200157137

PubMed Full text in PMC Similar studies SRA Run Selector

Select item 20015713620.

CRISPR and biochemical screens identify MAZ as a co-factor in CTCF-mediated insulation at Hox clusters [Hi-C]

(Submitter supplied) In this experiment, we sought to analyze how three dimensional genome organization of WT and MAZ knock-out (KO) cells change during differentiation of mouse embryonic stem cells (ESCs) into cervical motor neurons (MNs)