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Links from GEO DataSets

Items: 6

1.

Discerning role of a functional arsenic resistance cassette in evolution and adaptation of a rice pathogen

(Submitter supplied) Arsenic (As) is highly toxic element to all forms of life and is a major environmental contaminant. Understanding acquisition, detoxification, and adaptation mechanisms in bacteria that are associated with host in arsenic-rich conditions can provide novel insights into dynamics of host-microbe-microenvironment interactions. In the present study, we have investigated an arsenic resistance mechanism acquired during the evolution of a particular lineage in the population of Xanthomonas oryzae pv. more...
Organism:
Xanthomonas oryzae pv. oryzae
Type:
Expression profiling by high throughput sequencing
Platform:
GPL29508
8 Samples
Download data: TXT
Series
Accession:
GSE163417
ID:
200163417
2.

Rice (Nipponbare) transcriptome upon inoculation with Malian Xanthomonas oryzae pv. oryzae strain MAI1

(Submitter supplied) African Xanthomonas oryzae pv. oryzae strains seem most closely related to and share several genetic features with pathovar oryzicola despite causing symptoms of bacterial leaf blight. The ability of most Xanthomonas plant pathogenic bacteria to infect their host relies on the action of a specific family of type III effectors called the TAL effectors. These microbial transcription factors are injected into the plant and manipulate the host transcriptome upon binding to the promoters of plant genes. more...
Organism:
Oryza sativa Japonica Group
Type:
Expression profiling by high throughput sequencing
Platform:
GPL13834
6 Samples
Download data: TXT
Series
Accession:
GSE108504
ID:
200108504
3.

Time-resolved genome-wide pathogenic gene expression analysis of the plant pathogen Xanthomonas oryzae pv. oryzae (Xoo) via RNA-Seq

(Submitter supplied) Host-pathogen interactions, in particular during the early stages of infection, are important for the fate of both the invading pathogen and host. In pathogens, these interactions activate diverse pathogenic signals to cause disease in the host and evade the inevitably activated immune responses of the infected host. In this study, we used in vitro assay system and RNA-seq to analyze the time-resolved genome-wide gene expressions of Xanthomonas oryzae pv. more...
Organism:
Xanthomonas oryzae pv. oryzae KACC 10331
Type:
Expression profiling by high throughput sequencing
Platform:
GPL19216
14 Samples
Download data: TXT
Series
Accession:
GSE61607
ID:
200061607
4.

Dual RNA-seq of Xanthomonas oryzae pv. oryzicola infecting rice

(Submitter supplied) In this study, using a novel dual RNA-seq approach we monitored the global transcriptional changes in real time of Xanthomonas oryzae pv. oryzicola and rice during infection. Our transcriptome maps of Xoc strains infecting rice provide mechanistic insights into the bacterias adaptive responses to the host niche, with modulation of central metabolism being an important signature. The study also uncovers that infected rice responds by substantial alteration of the cell wall, stress and structural proteins.
Organism:
Xanthomonas oryzae pv. oryzicola; Oryza sativa
Type:
Non-coding RNA profiling by high throughput sequencing; Expression profiling by high throughput sequencing
Platforms:
GPL26222 GPL13160
5 Samples
Download data: TXT
Series
Accession:
GSE126994
ID:
200126994
5.

Host transcriptional reprogramming in response to the rice bacterial blight pathogen Xanthomonas oryzae pv.oryzae constitutively expressing the X. oryzae pv. oryzicola TAL2a effector from the high copy vector pKEB31

(Submitter supplied) We performed RNA-Seq of leaves of Oryza sativa L. ssp. japonica cv. Nipponbare 48 hours after inoculation with  Xanthomonas oryzae pv. oryzae strain PXO99A heterologously expressing the Tal2a effector, the designer TAL effector dT280 which targets a sequence overlapping the predicted Tal2a binding sequence in UCH, or the Tal11b effector. Results provide insight into the genes differentially regulated in a Tal2a- and dT280-specific manner.
Organism:
Oryza sativa Japonica Group
Type:
Expression profiling by high throughput sequencing
Platform:
GPL13834
6 Samples
Download data: TXT
Series
Accession:
GSE67958
ID:
200067958
6.

CGH of natural Saccharomyces cerevisiae strains

(Submitter supplied) Comparative Genomic Hybridization of natural Saccharomyces cerevisiae strains vs lab reference strains.
Organism:
Saccharomyces cerevisiae
Type:
Genome variation profiling by array
Platform:
GPL27156
22 Samples
Download data: GPR
Series
Accession:
GSE136466
ID:
200136466
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Supplemental Content

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