GEO DataSets

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.

Organism:

synthetic RNA; Homo sapiens; synthetic construct

Type:

Other

6 related Platforms

2932 Samples

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(Submitter supplied) Population scale sweeps of viral pathogens, such as SARS-CoV-2, require high intensity testing for effective management. However, reliable systems affording parallel testing of thousands of patients for pathogen infection have not yet been routinely employed. Here we describe “Systematic Parallel Analysis of RNA coupled to Sequencing for Covid-19 screening” (C19-SPAR-Seq), a multiplexed, readily automated platform for SARS-CoV-2 detection capable of analyzing tens of thousands of patient samples in a single instrument run. more...

Organism:

synthetic RNA; synthetic construct; Homo sapiens

Type:

Other

Platforms:

GPL29299 GPL27609 GPL21697

1702 Samples

Download data: CSV

(Submitter supplied) Population scale sweeps of viral pathogens, such as SARS-CoV-2, require high intensity testing for effective management. However, reliable systems affording parallel testing of thousands of patients for pathogen infection have not yet been routinely employed. Here we describe “Systematic Parallel Analysis of RNA coupled to Sequencing for Covid-19 screening” (C19-SPAR-Seq), a multiplexed, readily automated platform for SARS-CoV-2 detection capable of analyzing tens of thousands of patient samples in a single instrument run. more...

Organism:

synthetic RNA; synthetic construct; Homo sapiens

Type:

Other

Platforms:

GPL21697 GPL29299 GPL27609

862 Samples

Download data: CSV

(Submitter supplied) Population scale sweeps of viral pathogens, such as SARS-CoV-2, require high intensity testing for effective management. However, reliable systems affording parallel testing of thousands of patients for pathogen infection have not yet been routinely employed. Here we describe “Systematic Parallel Analysis of RNA coupled to Sequencing for Covid-19 screening” (C19-SPAR-Seq), a multiplexed, readily automated platform for SARS-CoV-2 detection capable of analyzing tens of thousands of patient samples in a single instrument run. more...

Organism:

synthetic construct; synthetic RNA; Homo sapiens

Type:

Other

Platforms:

GPL27028 GPL17769 GPL15520

316 Samples

Download data: CSV

(Submitter supplied) Population scale sweeps of viral pathogens, such as SARS-CoV-2, require high intensity testing for effective management. However, reliable systems affording parallel testing of thousands of patients for pathogen infection have not yet been routinely employed. Here we describe “Systematic Parallel Analysis of RNA coupled to Sequencing for Covid-19 screening” (C19-SPAR-Seq), a multiplexed, readily automated platform for SARS-CoV-2 detection capable of analyzing tens of thousands of patient samples in a single instrument run. more...

Organism:

synthetic RNA; Homo sapiens

Type:

Other

Platforms:

GPL15520 GPL27028

52 Samples

Download data: CSV

(Submitter supplied) During a pandemic, mitigation as well as protection of system-critical or vulnerable institutions requires massively parallel, yet cost-effective testing to monitor the spread of agents such as the current SARS-CoV2 virus. Here we present SARSeq, saliva analysis by RNA sequencing, as an approach to monitor presence of SARS-CoV2 and other respiratory viruses performed on tens of thousands of samples in parallel. more...

Organism:

Homo sapiens

Type:

Other

Platforms:

GPL15520 GPL21697

10 Samples

Download data: XLSX

(Submitter supplied) Reverse transcription loop-mediated isothermal amplification (RT-LAMP) is a fast and convenient method to amplify and identify the transcripts of a targeted pathogen. We combined bioinformatic and experimental analyses to improve the RT-LAMP assay performance for COVID-19 diagnosis. First, we developed an improved algorithm to design LAMP primers targeting the nucleocapsid (N), membrane (M), and spike (S) genes of SARS-CoV-2. more...

Organism:

synthetic construct; Homo sapiens

Type:

Other

Platforms:

GPL22790 GPL26967

2 Samples

Download data: TXT

(Submitter supplied) The effectiveness of virus culturing in 24 hours for the sequencing of SARS-CoV-2

Organism:

Severe acute respiratory syndrome coronavirus 2

Type:

Expression profiling by high throughput sequencing

Platform:

GPL29240

9 Samples

Download data: SF, TSV, WIG