GEO DataSets

(Submitter supplied) The enterococci comprise a genus of 49 low-GC content Gram-positive commensal species within the Firmicutes phylum that are known to occupy diverse habitats, notably the gastrointestinal core microbiota of nearly every phylum, including human. Of particular clinical relevance are two rogue species of enterococci, Enterococcus faecalis and the distantly related Enterococcus faecium, standing among the nefarious multi-drug resistant and hospital-acquired pathogens. more...

Organism:

Enterococcus faecium Aus0004; Enterococcus faecalis V583

Type:

Expression profiling by high throughput sequencing

Platforms:

GPL25048 GPL25049

12 Samples

Download data: WIG

(Submitter supplied) We investigated the RNA-protein interactome of Enterococcus faecalis V583 and Enterococcus faecium Aus0004 by native gradient fractionation of complexes coupled to RNA-sequencing. Whole bacterial cell lysates were analysed by size and density in a glycerol gradient. At native conditions, RNA-protein complexes stay intact and sediment as a whole. Sedimentation profiles of individual RNAs appear correlated in case of interaction in a complex. more...

Organism:

Enterococcus faecalis V583; Enterococcus faecium Aus0004

Type:

Expression profiling by high throughput sequencing; Other

Platforms:

GPL25048 GPL25049

46 Samples

Download data: FASTA, GFF, WIG

(Submitter supplied) Regulatory RNAs (sRNAs) are now considered as major players in many physiological and adaptive responses in pathogenic bacteria. sRNAs have been extensively studied in Gram-negative bacteria, but less information is available in Gram-positive pathogens. There is a spread of multidrug-resistant (MDR) opportunistic organisms, grouped as “ESKAPE” pathogens, which comprise enterococci, a leading cause of hospital-acquired infections and outbreaks with emergence of MDR isolates, especially vancomycin-resistant Enterococcus faecium (VREF). more...

Organism:

Enterococcus faecium Aus0004

Type:

Expression profiling by high throughput sequencing; Non-coding RNA profiling by high throughput sequencing

Platform:

GPL23028

4 Samples

Download data: TXT

(Submitter supplied) Transcriptional profiling of Enterococcus faecalis V583 comparing the transcriptome of cells grown in M17 + glucose 0.5% (GM17) with the transcriptome of cells grown in M17 + glucose 0.5% + 0.05 mM CuSO4

Organism:

Enterococcus faecalis; Enterococcus faecalis V583

Type:

Expression profiling by array

Platform:

GPL13826

3 Samples

Download data: GPR

(Submitter supplied) Transcriptional profiling of Enterococcus faecalis V583 comparing the transcriptome of cells grown in M17 + glucose 0.5% (GM17) with the transcriptome of cells grown in M17 + glucose 0.5% + 4 mM MnSO4

Organism:

Enterococcus faecalis; Enterococcus faecalis V583

Type:

Expression profiling by array

Platform:

GPL13826

3 Samples

Download data: GPR

(Submitter supplied) Transcriptional profiling of Enterococcus faecalis V583 comparing the transcriptome of cells grown in M17 + glucose 0.5% (GM17) with the transcriptome of cells grown in M17 + glucose 0.5% + 4 mM ZnSO4

Organism:

Enterococcus faecalis; Enterococcus faecalis V583

Type:

Expression profiling by array

Platform:

GPL13826

3 Samples

Download data: GPR