GEO DataSets

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.

Organism:

Shewanella piezotolerans WP3

Type:

Expression profiling by array

Platform:

GPL16568

12 Samples

Download data: GPR

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.

Organism:

Shewanella piezotolerans WP3

Type:

Expression profiling by array

Platform:

GPL16568

18 Samples

Download data

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.

Organism:

Shewanella piezotolerans WP3

Type:

Expression profiling by array

Platform:

GPL16568

18 Samples

Download data

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.

Organism:

Shewanella piezotolerans WP3

Type:

Expression profiling by array

Platform:

GPL16568

12 Samples

Download data

(Submitter supplied) The hns gene was deleted from WP3 genome to construct the WP3Δhns strain. The two strains were cultured at 20°C and the transcriptional profiles were compared.

Organism:

Shewanella piezotolerans WP3

Type:

Expression profiling by array

Platform:

GPL16568

6 Samples

Download data: LSR

(Submitter supplied) The hns gene was deleted from WP3 genome to construct the WP3Δhns strain. The two strains were cultured at 4°C and the transcriptional profiles were compared.

Organism:

Shewanella piezotolerans WP3

Type:

Expression profiling by array

Platform:

GPL16568

6 Samples

Download data: LSR

(Submitter supplied) The lexA gene was deleted from WP3 genome to construct the WP3ΔlexA strain. The two strains were cultured at 20°C and the transcriptional profiles were compared.

Organism:

Shewanella piezotolerans WP3

Type:

Expression profiling by array

Platform:

GPL16568

6 Samples

Download data: LSR

(Submitter supplied) The lexA gene was deleted from WP3 genome to construct the WP3ΔlexA strain. The two strains were cultured at 4°C and the transcriptional profiles were compared.

Organism:

Shewanella piezotolerans WP3

Type:

Expression profiling by array

Platform:

GPL16568

6 Samples

Download data: LSR

(Submitter supplied) The WP3 strains were cultured at 4°C and 25°C, respectively. The transcriptional profiles at these two different temperatures were compared.

Organism:

Shewanella piezotolerans WP3

Type:

Expression profiling by array

Platform:

GPL16568

6 Samples

Download data: GAL, GPR

(Submitter supplied) The prophage and RF DNA of SW1 were removed from WP3 to construct the phage-free strain. The two strains were cultured at 4°C and the transcriptional profiles were compared.

Organism:

Shewanella piezotolerans WP3

Type:

Expression profiling by array

Platform:

GPL16568

2 Samples

Download data: LSR

(Submitter supplied) This study presents a global transcriptional analysis of the cold shock response of Shewanella oneidensis MR-1 after a temperature downshift from 30 to 8 or 15oC based on time-series microarray experiments. More than 700 genes were found to be significantly affected (p < 0.05) upon cold shock challenge, especially at 8oC. The temporal gene expression patterns of the classical cold-shock genes varied and only some of them, most notably so1648 and so2787, were differentially regulated in response to temperature downshift. more...

Organism:

Shewanella oneidensis MR-1

Type:

Expression profiling by array

Platform:

GPL3253

60 Samples

Download data

(Submitter supplied) In this work we analyzed changes in gene espression in Shewanella baltica upon cold stress. In order to imitate natural environment, we cultured bacteria in the Instant Ocean medium in a chemostat. Samples were collected after 90 and 180 minutes of cold stress and analyzed by RNA sequencing. The transcriptomic response could be characterized as global downregulation of gene expression (613 genes downregulated) and we found only 242 genes which were upregulated. more...

Organism:

Shewanella baltica

Type:

Expression profiling by high throughput sequencing

Platform:

GPL28560

5 Samples

Download data: TXT, WIG

(Submitter supplied) High hydrostatic pressure (HHP) has been used to pre-condition embryos before essential, yet potentially detrimental procedures such as cryopreservation. However, the mechanisms for HHP are poorly understood. We treated bovine blastocysts with three different HHP (40, 60 and 80 MPa) in combination with three recovery periods (0, 1h, 2h post HHP). Re-expansion rates were significantly higher at 40 and 60 but lower at 80 MPa after vitrification-warming in the treated groups than controls. more...

Organism:

Bos taurus

Type:

Expression profiling by array

Platform:

GPL9689

12 Samples

Download data: GPR, XLS

(Submitter supplied) We have identified differentially expressed genes according to hydrostatic pressure growth conditions in Desulfovibrio hydrothermalis. The transcriptomic datasets report the molecular mechanisms which could be involved in such adaptation and give information for the piezophile sulfate-reducing bacteria research communities. The data obtained pointed out a gradual response of D. hydrothermalis to an increase of hydrostatic pressure, with a threshold above 10 MPa and the involvement of a quite limited number of genes and/or pathways involved in the adaptation to hydrostatic pressure.

Organism:

Maridesulfovibrio hydrothermalis AM13 = DSM 14728

Type:

Expression profiling by high throughput sequencing

Platform:

GPL18400

6 Samples

Download data: BEDGRAPH

(Submitter supplied) Arctic Mesorhizobium strain N33 was isolated from nodules of the Oxytropis arctobia in Canada’s eastern Arctic. This symbiotic bacterium can grow from 0 to 30°C, is one of the best known cold-adapted rhizobia, and can fix nitrogen at ~10°C. Here, the key molecular mechanisms of cold adaptation were investigated by determining changes in transcript profiles when cells were treated under eight different temperature conditions, including both sustained and transient cold treatments compared with cells grown at room temperature.

Organism:

Mesorhizobium sp. N33

Type:

Expression profiling by array

Platform:

GPL19113

42 Samples

Download data: GPR

(Submitter supplied) Vegetative cells of B. subtilis can recover from injury caused by high hydrostatic pressure (HHP) treatment at 250 MPa. DNA microarray analysis revealed that many ribosomal genes and translation relating factors (e.g. translation initiation factors) were induced during a growth-arrested phase after the HHP treatment. Expression of cold shock-responsive genes, whose products play key roles for efficient translation, and heat shock-responsive genes, whose product mediates the correct protein folding or degrades misfolded proteins, were also induced. more...

Organism:

Bacillus subtilis

Type:

Expression profiling by array

Platform:

GPL343

6 Samples

Download data: CEL

(Submitter supplied) We have identified differentially expressed genes according to hydrostatic pressure growth conditions in Desulfovibrio piezophilus. The transcriptomic datasets report the molecular mechanisms which could be involved in such adaptation and give information for the piezophile sulfate-reducing bacteria research communities. The data obtained pointed out different responses of D. piezophilus to an increase of hydrostatic pressure.

Organism:

Pseudodesulfovibrio piezophilus C1TLV30

Type:

Expression profiling by high throughput sequencing

Platform:

GPL18763

6 Samples

Download data: BEDGRAPH

(Submitter supplied) Microarray analysis of the global gene expression patterns of Tropheryma whipplei in response to thermal stresses showed unique transcription profiles. A few genes were regulated after 15 min exposure at 43°C, including the dnaK regulon composed of grpE, hspR, dnaK, clpB, cbpA as well as the TWT745 ORFan gene which might encode for another heat-shock protein. This operon is likely to be regulated by two HspR associated inverted repeats (HAIR motifs) found within its 5' region. more...

Organism:

Tropheryma whipplei

Type:

Expression profiling by array

Platform:

GPL3210

12 Samples

Download data

(Submitter supplied) Temperature has fundamental influences on fitness and distribution of insects. There have been very few studies on effects of mild cold conditions on insects. We found Plutella xylostella had reduced fitness and females produced few viable eggs when reared at 10°C, a temperature at which they can complete development. Male moths reared at 10°C were not able to fertilize eggs, but the eggs produced by female moths reared at this temperature were viable and could be fertilisied by males moths reared at a warmer temperature (25°C). more...

Organism:

Plutella xylostella

Type:

Expression profiling by high throughput sequencing

Platform:

GPL28843

12 Samples

Download data: TXT

(Submitter supplied) 5' RNA-Seq of mRNA from S. oneidensis MR-1 grown aerobically in defined lactate medium

Organism:

Shewanella oneidensis MR-1

Type:

Expression profiling by high throughput sequencing

Platform:

GPL15825

1 Sample

Download data: WIG