GEO DataSets

(Submitter supplied) Background The set of all mRNA molecules present in a cell constitute the transcriptome. The transcriptome varies depending on cell type as well as in response to internal and external stimuli during development. Chili pepper is an economically and culturally important horticultural crop as well as a good model for the study of secondary metabolism during fruit development. Here we present a study of the changes that occur in the transcriptome of chili pepper fruit during development and ripening. more...

Organism:

Capsicum annuum

Type:

Expression profiling by high throughput sequencing

Platform:

GPL18177

8 Samples

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(Submitter supplied) Two fruit development stages of the wild chiltepin pepper (Capsicum annuum var. glabriusculum) were studied. RNA-Seq data was obtained from fruits at 20 and 68 days after anthesis with two biological replicates for a total of 4 samples. 260 million raw reads were sequenced and over 80% of them mapped back to the Capsicum annuum genome.

Organism:

Capsicum annuum

Type:

Expression profiling by high throughput sequencing

Platform:

GPL29996

4 Samples

Download data: FA, GFF3, TSV

(Submitter supplied) Twelve chili pepper accessions, six domesticated, four wild and two F1 crosses were studied. RNA-Seq experiments were performed with fruits from each accession at 7 different times after anthesis. Additionally, samples of seedlings from two accessions were evaluated. The data set is comprised by 179 samples, that in total have more than 3 billion reads map to the Capsicum annuum genome.

Organism:

Capsicum annuum

Type:

Expression profiling by high throughput sequencing

Platform:

GPL29650

179 Samples

Download data: CSV, FA, GTF

(Submitter supplied) High-throughput sequencing was employed to identify microRNAs in pepper from 10 tissue samples

Organism:

Capsicum annuum

Type:

Non-coding RNA profiling by high throughput sequencing

Platform:

GPL16195

10 Samples

Download data: TXT

(Submitter supplied) Background: The use of cytoplasmic male sterility (CMS) in F1 hybrid seed production of chili pepper is increasingly popular. However, the molecular mechanisms of cytoplasmic male sterility and fertility restoration remain poorly understood due to limited transcriptomic and genomic data. Therefore, we analyzed the difference between a CMS line 121A and its near-isogenic restorer line 121C in transcriptome level using next generation sequencing technology (NGS), aiming to find out critical genes and pathways associated with the male sterility. more...

Organism:

Capsicum annuum

Type:

Expression profiling by high throughput sequencing

Platform:

GPL16195

2 Samples

Download data: FASTA, TXT

(Submitter supplied) In this study, RNA Seq analysis was performed for the comprehensive understanding of the transcriptome of the durian, Durio zibethinus Murr. using Illumina HiSeq Platform. In comparison with the durian reference genome, the studies identified 3,438 novel exons and 1,197 novel loci. The total number of novel transcripts were 280. Ninety-seven novel transcripts did not show any similarity with any sequences available in the Genebank’s nucleotide database. more...

Organism:

Durio zibethinus

Type:

Expression profiling by high throughput sequencing

Platform:

GPL27140

9 Samples

Download data: TXT