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Links from GEO DataSets

Items: 20

1.

h3k27me3_col(cvi)-Analysis of epigenomic changes in hybrids Arabidopsis thaliana Col-0, C24 and Cvi accessions

(Submitter supplied) a2e_heterosis - h3k27me3_col(cvi) - Arabidopsis thaliana accessions (Col-0, C24 and Cvi) and their hybrid were used to investigate the dynamics of the epigenome after intraspecific hybridization between - H3K27me3 profiling in Col
Organism:
Arabidopsis thaliana
Type:
Genome variation profiling by genome tiling array; Genome binding/occupancy profiling by genome tiling array
Platforms:
GPL10920 GPL10919
7 Samples
Download data: PAIR
Series
Accession:
GSE25052
ID:
200025052
2.

h3k4me2_col_chr4-Analysis of epigenomic changes in hybrids Arabidopsis thaliana Col-0, C24 and Cvi accessions

(Submitter supplied) a2e_heterosis - h3k4me2_col_chr4 - Arabidopsis thaliana accessions (Col-0, C24 and Cvi) and their hybrid were used to investigate the dynamics of the epigenome after intraspecific hybridization between - H3K4me2 profiling in Col
Organism:
Arabidopsis thaliana
Type:
Genome variation profiling by genome tiling array; Genome binding/occupancy profiling by genome tiling array
Platform:
GPL10772
8 Samples
Download data: GPR
Series
Accession:
GSE25061
ID:
200025061
3.

h3k4me2_colxc24_chr4-Analysis of epigenomic changes in hybrids Arabidopsis thaliana Col-0, C24 and Cvi accessions

(Submitter supplied) a2e_heterosis - h3k4me2_colxc24_chr4 - Arabidopsis thaliana accessions (Col-0, C24 and Cvi) and their hybrid were used to investigate the dynamics of the epigenome after intraspecific hybridization between - H3K4me2 profiling in ColxC24 hybrids
Organism:
Arabidopsis thaliana
Type:
Genome variation profiling by genome tiling array; Genome binding/occupancy profiling by genome tiling array
Platform:
GPL10772
8 Samples
Download data: GPR
Series
Accession:
GSE25060
ID:
200025060
4.

h3k27me3_col(c24)-Analysis of epigenomic changes in hybrids Arabidopsis thaliana Col-0, C24 and Cvi accessions

(Submitter supplied) a2e_heterosis - h3k27me3_col(c24) - Arabidopsis thaliana accessions (Col-0, C24 and Cvi) and their hybrid were used to investigate the dynamics of the epigenome after intraspecific hybridization between - H3K27me3 profiling in Col
Organism:
Arabidopsis thaliana
Type:
Genome variation profiling by genome tiling array; Genome binding/occupancy profiling by genome tiling array
Platforms:
GPL10920 GPL10919
8 Samples
Download data: PAIR
Series
Accession:
GSE25059
ID:
200025059
5.

h3k27me3_c24-Analysis of epigenomic changes in hybrids Arabidopsis thaliana Col-0, C24 and Cvi accessions

(Submitter supplied) a2e_heterosis - h3k27me3_c24 - Arabidopsis thaliana accessions (Col-0, C24 and Cvi) and their hybrid were used to investigate the dynamics of the epigenome after intraspecific hybridization between - H3K27me3 profiling in C24
Organism:
Arabidopsis thaliana
Type:
Genome variation profiling by genome tiling array; Genome binding/occupancy profiling by genome tiling array
Platforms:
GPL10919 GPL10920
7 Samples
Download data: PAIR
Series
Accession:
GSE25058
ID:
200025058
6.

h3k27me3_colxc24-Analysis of epigenomic changes in hybrids Arabidopsis thaliana Col-0, C24 and Cvi accessions

(Submitter supplied) a2e_heterosis - h3k27me3_colxc24 - Arabidopsis thaliana accessions (Col-0, C24 and Cvi) and their hybrid were used to investigate the dynamics of the epigenome after intraspecific hybridization between - H3K27me3 profiling in ColxC24 hybrids
Organism:
Arabidopsis thaliana
Type:
Genome variation profiling by genome tiling array; Genome binding/occupancy profiling by genome tiling array
Platforms:
GPL10920 GPL10919
8 Samples
Download data: PAIR
Series
Accession:
GSE25057
ID:
200025057
7.

h3k4me2_col(cvi)-Analysis of epigenomic changes in hybrids Arabidopsis thaliana Col-0, C24 and Cvi accessions

(Submitter supplied) a2e_heterosis - h3k4me2_col(cvi) - Arabidopsis thaliana accessions (Col-0, C24 and Cvi) and their hybrid were used to investigate the dynamics of the epigenome after intraspecific hybridization between - H3K4me2 profiling in Col-0
Organism:
Arabidopsis thaliana
Type:
Genome variation profiling by genome tiling array; Genome binding/occupancy profiling by genome tiling array
Platforms:
GPL10919 GPL10920
8 Samples
Download data: PAIR
Series
Accession:
GSE25056
ID:
200025056
8.

h3k4me2_cvi-Analysis of epigenomic changes in hybrids Arabidopsis thaliana Col-0, C24 and Cvi accessions

(Submitter supplied) a2e_heterosis - h3k4me2_cvi - Arabidopsis thaliana accessions (Col-0, C24 and Cvi) and their hybrid were used to investigate the dynamics of the epigenome after intraspecific hybridization between - H3K4me2 profiling in Cvi
Organism:
Arabidopsis thaliana
Type:
Genome variation profiling by genome tiling array; Genome binding/occupancy profiling by genome tiling array
Platforms:
GPL10920 GPL10919
8 Samples
Download data: PAIR
Series
Accession:
GSE25054
ID:
200025054
9.

h3k4me2_colxcvi-Analysis of epigenomic changes in hybrids Arabidopsis thaliana Col-0, C24 and Cvi accessions

(Submitter supplied) a2e_heterosis - h3k4me2_colxcvi - Arabidopsis thaliana accessions (Col-0, C24 and Cvi) and their hybrid were used to investigate the dynamics of the epigenome after intraspecific hybridization between - H3K4me2 profiling in ColxCvi hybrids
Organism:
Arabidopsis thaliana
Type:
Genome variation profiling by genome tiling array; Genome binding/occupancy profiling by genome tiling array
Platforms:
GPL10920 GPL10919
8 Samples
Download data: PAIR
Series
Accession:
GSE25053
ID:
200025053
10.

h3k27me3_cvi-Analysis of epigenomic changes in hybrids Arabidopsis thaliana Col-0, C24 and Cvi accessions

(Submitter supplied) a2e_heterosis - h3k27me3_cvi - Arabidopsis thaliana accessions (Col-0, C24 and Cvi) and their hybrid were used to investigate the dynamics of the epigenome after intraspecific hybridization between - H3K27me3 profiling in Cvi seedlings
Organism:
Arabidopsis thaliana
Type:
Genome variation profiling by genome tiling array; Genome binding/occupancy profiling by genome tiling array
Platforms:
GPL10919 GPL10920
8 Samples
Download data: PAIR
Series
Accession:
GSE25051
ID:
200025051
11.

h3k27me3_colxcvi-Analysis of epigenomic changes in hybrids Arabidopsis thaliana Col-0, C24 and Cvi accessions

(Submitter supplied) a2e_heterosis - h3k27me3_colxcvi - Arabidopsis thaliana accessions (Col-0, C24 and Cvi) and their hybrid were used to investigate the dynamics of the epigenome after intraspecific hybridization between - H3K27me3 profiling in ColxCvi hybrids
Organism:
Arabidopsis thaliana
Type:
Genome variation profiling by genome tiling array; Genome binding/occupancy profiling by genome tiling array
Platforms:
GPL10920 GPL10919
8 Samples
Download data: PAIR
Series
Accession:
GSE25050
ID:
200025050
12.

h3k4me2_c24_chr4-Analysis of epigenomic changes in hybrids Arabidopsis thaliana Col-0, C24 and Cvi accessions

(Submitter supplied) a2e_heterosis - h3k4me2_c24_chr4 - Arabidopsis thaliana accessions (Col-0, C24 and Cvi) and their hybrid were used to investigate the dynamics of the epigenome after intraspecific hybridization between - H3K4me2 profiling in C24
Organism:
Arabidopsis thaliana
Type:
Genome variation profiling by genome tiling array; Genome binding/occupancy profiling by genome tiling array
Platform:
GPL10772
8 Samples
Download data: GPR
Series
Accession:
GSE25049
ID:
200025049
13.

Analysis of epigenomic changes in hybrids Arabidopsis thaliana Col-0, C24 and Cvi accessions

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.
Organism:
Arabidopsis thaliana
Type:
Genome variation profiling by genome tiling array; Genome binding/occupancy profiling by genome tiling array
Platforms:
GPL10920 GPL10919 GPL10772
104 Samples
Download data: GPR, PAIR
Series
Accession:
GSE24836
ID:
200024836
14.

cgh_colvscvi_wg-Analysis of epigenomic changes in hybrids Arabidopsis thaliana Col-0, C24 and Cvi accessions

(Submitter supplied) a2e_heterosis - cgh_colvscvi_wg - Arabidopsis thaliana accessions (Col-0, C24 and Cvi) and their hybrid were used to investigate the dynamics of the epigenome after intraspecific hybridization between - Comparative genome hybridization between Arabidopsis thaliana accessions Col-0 and CVi.
Organism:
Arabidopsis thaliana
Type:
Genome variation profiling by genome tiling array
Platforms:
GPL10919 GPL10920
4 Samples
Download data: PAIR
Series
Accession:
GSE24835
ID:
200024835
15.

cgh_colvsc24_wg-Analysis of epigenomic changes in hybrids Arabidopsis thaliana Col-0, C24 and Cvi accessions

(Submitter supplied) a2e_heterosis - cgh_colvsc24_wg - Arabidopsis thaliana accessions (Col-0, C24 and Cvi) and their hybrid were used to investigate the dynamics of the epigenome after intraspecific hybridization between - Comparative genome hybridization between Arabidopsis thaliana accessions Col-0 and C24.
Organism:
Arabidopsis thaliana
Type:
Genome variation profiling by genome tiling array
Platforms:
GPL10920 GPL10919
2 Samples
Download data: PAIR
Series
Accession:
GSE24831
ID:
200024831
16.

cgh_colvsc24_chr4-Analysis of epigenomic changes in hybrids Arabidopsis thaliana Col-0, C24 and Cvi accessions

(Submitter supplied) a2e_heterosis - cgh_colvsc24_chr4 - Arabidopsis thaliana accessions (Col-0, C24 and Cvi) and their hybrid were used to investigate the dynamics of the epigenome after intraspecific hybridization between - Comparative genome hybridization between Arabidopsis thaliana accessions Col-0 and C24 Keywords: cgh,chip-chip
Organism:
Arabidopsis thaliana
Type:
Genome variation profiling by genome tiling array
Platform:
GPL10772
4 Samples
Download data: GPR
Series
Accession:
GSE24494
ID:
200024494
17.

Natural variation of H3K27me3 modification between two Arabidopsis accessions and its inheritance in hybrid

(Submitter supplied) Mechanism, inheritance patterns and biological significance remain unclear. Here, we generated genome-wide integrated maps of H3K27me3 modification and transcriptome for Col, C24 and their F1 hybrid, and their clf mutants. We found that H3K27me3 modification profiles were divergent between Col and C24, and were inherited mainly additively in hybrid. By comparing H3K27me3 modification ratio between parents to allelic H3K27me3 modification ratio in hybrid, we identified cis- and trans-regulatory divergence for H3K27me3 modification variation between Col and C24, and found that cis-regulatory divergence was the predominant contributor to H3K27me3 variation. more...
Organism:
Arabidopsis thaliana
Type:
Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing
Platform:
GPL9062
18 Samples
Download data: TXT
Series
Accession:
GSE62615
ID:
200062615
18.

RNA-seq analysis of alternative splicing between two Arabidopsis accessions and its inheritance in hybrid

(Submitter supplied) To uncover the possible regulatory mechanism in regulatory alternative splicing in plants evolution, we used RNA-seq to compare the transcriptomes in Arabidopsis ecotypes Col and C24. We found different class of AS types have different regulatory mechanisms in Arabidopsis and divergence of alternative splicing in different class is varied in evolution. Sequence variation analysis had found evolution divergent AS events significantly altered their sequences compared to conserved events and the variation is AS class specific.
Organism:
Arabidopsis thaliana
Type:
Expression profiling by high throughput sequencing
Platform:
GPL9062
12 Samples
Download data: TXT
Series
Accession:
GSE62478
ID:
200062478
19.

Arabidopsis thaliana open flowers: Wild type vs. sdg4 mutant (SALK T-DNA line_128444)

(Submitter supplied) Transcriptional profiling in open flowers of Arabidopsis wild type control plants and sdg4 mutant (SALK T-DNA line_128444). The sdg4 mutant is a Arabidopsis T-DNA mutant in which T-DNA is inserted in a SET domain protein, SDG4 (At4g30860). Expression profiling studies indicate that SDG4 might function in modulating the expression of the genes that function in the growth of pollen tubes. Keywords: epigenetic modification
Organism:
Arabidopsis thaliana
Type:
Expression profiling by array
Platform:
GPL6177
2 Samples
Download data: TXT
Series
Accession:
GSE9543
ID:
200009543
20.

Gene expression in unfertilized eggs and the MBT stage of zebrafish embryos

(Submitter supplied) Very little is known on the nature of epigenetic states in developing zebrafish despite its growing importance as a model organism in developmental biology. We report histone modifications on promoters of pluripotency genes in zebrafish embryos at the mid-late blastula transition (MBT+) stage. We identify three classes of expressed genes based on these profiles: (1) those with a promoter occupied by marks of active genes without any repressive marks; (2) those co-occupied by both activating and repressive modifications; of these genes, klf4 was notably found to be mosaically expressed in the embryo, possibly accounting for this epigenetic pattern; (3) those occupied by repressive marks with, surprisingly, little not acetylated H3K9 or H4. more...
Organism:
Danio rerio
Type:
Expression profiling by array
Platform:
GPL9998
7 Samples
Download data: TXT
Series
Accession:
GSE20137
ID:
200020137
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