GEO DataSets

(Submitter supplied) ra10-01_laccases; laccase mutations. We demonstrated that laccases are involved in lignin polymerisation. Mutants have already been tested on microarrays and there is few differences compared to wild-type. The laccase mutation seems surgical. We possess a new double mutant, called snips, with a semi-dwarf phenotype, and we want to determine its profile.

Organism:

Arabidopsis thaliana

Type:

Expression profiling by array

Platform:

GPL9553

20 Samples

Download data: GPR

(Submitter supplied) RNA-seq was performed to examine the differential expressed transcriptomes in hdt1 plants during stem development compare to wild type plants.

Organism:

Arabidopsis thaliana

Type:

Expression profiling by high throughput sequencing

Platform:

GPL21785

6 Samples

Download data: XLSX

(Submitter supplied) Transcriptomic analysis of gene expression during the differentiation of cell suspension cultures into tracheary elements using the biological system published by Pesquet et al., Current Biology (2010): tracheary element differentiation was triggered by externally supplying hormone-free habituated cell suspension cultures of Arabidopsis thaliana Col-0 with auxin, cytokinin and epibrassinolides; RNA samples extracted from 3 independent time-courses every 12h from 0h to 4 days were analyzed using ATH1 Arabidopsis Affymetrix micro-array

Organism:

Arabidopsis thaliana

Type:

Expression profiling by array

Platform:

GPL198

27 Samples

Download data: CEL

(Submitter supplied) Arabidopsis plants (ecotype Ler) were grown under short day conditions (8h cool white fluorescent light at 100 uE, 16h dark) at 20 °C and ambient humidity in PGW36 phytochambers (Controlled Environment Ltd., Winnipeg, MB, Canada). Plants were grown in Redi soil (Grace & Co, Ajax, ON, Canada) in 12 cm pots at a density of five plants per pot without fertilization for 8 weeks. Light conditions were then changed to long day (16h light, 8h dark), and plants were fertilized once with standard 10-15-10 plant fertilizer (150 ul in 300 ml water per pot) (Schultz, St. more...

Organism:

Arabidopsis thaliana

Type:

Expression profiling by array

Dataset:

GDS2895

Platform:

GPL1713

20 Samples

Download data

Analysis of sections from 5 and 10 cm long ecotype Ler bolting stems. Different stages of vascular and interfascicular fiber differentiation can be identified along the axis of bolting stems. Results provide insight into the molecular mechanisms controlling this pattern of development.

Organism:

Arabidopsis thaliana

Type:

Expression profiling by array, log2 ratio, 2 development stage, 5 other sets

Platform:

GPL1713

Series:

GSE2000

20 Samples

Download data

(Submitter supplied) Purpose: To investigate the global impact of lignin perturbation on transcription in plants, we analyzed transcriptomes from rapidly lignifying stem tissue in wild-type Arabidopsis and 13 selected mutants. Methods: RNA-sequencing was conducted to profile the transcriptome in basal stem tissue of Arabidopsis plants. PolyA+ RNA libraries were constructed and paired-end sequencing was performed on Illumina NovaSeq 6000. more...

Organism:

Arabidopsis thaliana

Type:

Expression profiling by high throughput sequencing

Platform:

GPL26208

60 Samples

Download data: CSV