GEO DataSets

(Submitter supplied) A microarray and quantitative Real-Time PCR-based study was conducted in watermelon [Citrullus lanatus (Thunb.) Matsum. & Nakai var. lanatus] in order to elucidate the flow of events associated with fruit development and ripening in this species. RNA from three different maturation stages of watermelon fruit, as well as leaf, were collected from field grown plants during three consecutive years, and hybridized to high-density, photolithography microarrays. more...

Organism:

Citrullus lanatus

Type:

Expression profiling by array

Platform:

GPL6772

12 Samples

Download data: PAIR

(Submitter supplied) Pineapple is a non climacteric fruit. This study investigates changes in gene expression between the mature green fruit and mature yellow fruit ripening stages

Organism:

Ananas comosus

Type:

Expression profiling by array

Platform:

GPL15669

3 Samples

Download data: TXT

(Submitter supplied) Element type - cDNA double stranded Element generation protocol - PCR using 5’ amino modified primers Production protocol - contact pin (Telechem) Pin configuration - 16 (4x4) Surface - glass Surface name - Corning UltraGAPS Attachment protocol - Covalent (UV Crosslink 250mJ)

Organism:

Ananas comosus

1 Series

3 Samples

Download data

(Submitter supplied) Investigation gene expression level changes in four different melon fruits at four different developmental satges Transcriptomic analysis of developing melon fruits from two climacteric (cvs. Védrantais and Dulce) and two non-climacteric (cv. Piel de sapo and accession PI 161375) at 15, 25, 35 Days After Pollination (DAP) and Harvest stage

Organism:

Cucumis melo

Type:

Expression profiling by array

Platform:

GPL13748

41 Samples

Download data: TXT

(Submitter supplied) Microarray analysis is a technique that can be employed to provide expression profiles of single genes and a new insight to elucidate the biological mechanisms responsible for fruit development. To evaluate expression of genes mostly engaged in fruit development between P. mume and P. armeniaca, we first identified differentially expressed transcripts along the entire fruit life cycle by using microarrays spotted with 10,641 ESTs collected from P. more...

Organism:

Prunus persica; Prunus salicina; Prunus mume; Prunus armeniaca

Type:

Expression profiling by array

Platform:

GPL15562

8 Samples

Download data: PDF, TXT, XLS

(Submitter supplied) Two fruit development stages of the wild chiltepin pepper (Capsicum annuum var. glabriusculum) were studied. RNA-Seq data was obtained from fruits at 20 and 68 days after anthesis with two biological replicates for a total of 4 samples. 260 million raw reads were sequenced and over 80% of them mapped back to the Capsicum annuum genome.

Organism:

Capsicum annuum

Type:

Expression profiling by high throughput sequencing

Platform:

GPL29996

4 Samples

Download data: FA, GFF3, TSV

(Submitter supplied) To provide a broad analysis of gene expression changes in developing embryos from a solanaceous species, we produced amplicon-derived microarrays with 7741 ESTs isolated from Solanum chacoense ovules bearing embryos from all developmental stages. Our aims were to: 1) identify genes expressed in a tissue-specific and temporal-specific manner; 2) define clusters of genes showing similar patterns of spatial and temporal expression; and 3) identify stage-specific or transition-specific candidate genes for further functional genomic analyses.We analyzed gene expression during S. more...

Organism:

Solanum chacoense

Type:

Expression profiling by array

Platform:

GPL10411

62 Samples

Download data: TXT

(Submitter supplied) In this study, RNA Seq analysis was performed for the comprehensive understanding of the transcriptome of the durian, Durio zibethinus Murr. using Illumina HiSeq Platform. In comparison with the durian reference genome, the studies identified 3,438 novel exons and 1,197 novel loci. The total number of novel transcripts were 280. Ninety-seven novel transcripts did not show any similarity with any sequences available in the Genebank’s nucleotide database. more...

Organism:

Durio zibethinus

Type:

Expression profiling by high throughput sequencing

Platform:

GPL27140

9 Samples

Download data: TXT