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Links from GEO DataSets

Items: 20

1.

Arabidopsis thaliana open flowers: Wild type vs. sdg4 mutant (SALK T-DNA line_128444)

(Submitter supplied) Transcriptional profiling in open flowers of Arabidopsis wild type control plants and sdg4 mutant (SALK T-DNA line_128444). The sdg4 mutant is a Arabidopsis T-DNA mutant in which T-DNA is inserted in a SET domain protein, SDG4 (At4g30860). Expression profiling studies indicate that SDG4 might function in modulating the expression of the genes that function in the growth of pollen tubes. Keywords: epigenetic modification
Organism:
Arabidopsis thaliana
Type:
Expression profiling by array
Platform:
GPL6177
2 Samples
Download data: TXT
Series
Accession:
GSE9543
ID:
200009543
2.

Methyl DIP-chip from self-pollinated ddm1 mutant and ddm1 kyp double mutant

(Submitter supplied) Methylation of histone H3 lysine 9 (H3K9me) and small RNA are associated with constitutively silent chromatin in diverse eukaryotes including plants. In plants, silent transposons are also marked by cytosine methylation, especially at non-CpG sites. The transposon-specific non-CpG methylation in plants is controlled by small RNA and H3K9me. Although it is often assumed that small RNA directs H3K9me, interaction between small RNA and H3K9me has not been directly shown in plants. more...
Organism:
Arabidopsis thaliana
Type:
Methylation profiling by genome tiling array
Platforms:
GPL8080 GPL14974 GPL14975
18 Samples
Download data: PAIR
Series
Accession:
GSE34222
ID:
200034222
3.

Identification of AGL24 downstream genes by using XVE inducible system

(Submitter supplied) To understand the transcriptional program controlled by AGL24, we took advantage of a functional estradiol-inducible AGL24 expression system in combination with microarray analysis to identify AGL24 target genes. Keywords: inducible system
Organism:
Arabidopsis thaliana
Type:
Expression profiling by array
Platform:
GPL198
6 Samples
Download data: CEL
Series
Accession:
GSE6954
ID:
200006954
4.

SET DOMAIN GROUP 2 is the major histone H3 lysine-4 tri-methyltransferase in Arabidopsis thaliana

(Submitter supplied) Post-translational modifications of histones play important roles in modulating chromatin structure and regulating gene expression. We have previously shown that over two thirds of Arabidopsis genes contain histone H3 methylation at lysine-4 (H3K4me), and that tri-methylation of H3K4 (H3K4me3) is preferentially located at actively transcribed genes. In addition, several Arabidopsis mutants with locus-specific loss of H3K4me have been found to display various developmental abnormalities. more...
Organism:
Arabidopsis thaliana
Type:
Expression profiling by array
Platform:
GPL198
6 Samples
Download data: CEL
Series
Accession:
GSE23208
ID:
200023208
5.

Mechanistic insights into plant SUVH family H3K9 methyltransferases and their binding to context-biased non-CG DNA methylation

(Submitter supplied) DNA methylation functions in gene silencing and the maintenance of genome integrity. In plants, non-CG DNA methylation is linked through a self-reinforcing loop with histone 3 lysine 9 dimethylation (H3K9me2). The plant-specific SUPPRESSOR OF VARIEGATION 3–9 HOMOLOG (SUVH) family H3K9 methyltransferases (MTases) bind to DNA methylation marks and catalyze H3K9 methylation. Here, we analyzed the structure and function of Arabidopsis thaliana SUVH6 to understand how this class of enzyme maintains methylation patterns in the genome. more...
Organism:
Arabidopsis thaliana
Type:
Genome binding/occupancy profiling by high throughput sequencing
Platform:
GPL21785
10 Samples
Download data: WIG
Series
Accession:
GSE114009
ID:
200114009
6.

h3k4me2_col_chr4-Analysis of epigenomic changes in hybrids Arabidopsis thaliana Col-0, C24 and Cvi accessions

(Submitter supplied) a2e_heterosis - h3k4me2_col_chr4 - Arabidopsis thaliana accessions (Col-0, C24 and Cvi) and their hybrid were used to investigate the dynamics of the epigenome after intraspecific hybridization between - H3K4me2 profiling in Col
Organism:
Arabidopsis thaliana
Type:
Genome variation profiling by genome tiling array; Genome binding/occupancy profiling by genome tiling array
Platform:
GPL10772
8 Samples
Download data: GPR
Series
Accession:
GSE25061
ID:
200025061
7.

h3k4me2_colxc24_chr4-Analysis of epigenomic changes in hybrids Arabidopsis thaliana Col-0, C24 and Cvi accessions

(Submitter supplied) a2e_heterosis - h3k4me2_colxc24_chr4 - Arabidopsis thaliana accessions (Col-0, C24 and Cvi) and their hybrid were used to investigate the dynamics of the epigenome after intraspecific hybridization between - H3K4me2 profiling in ColxC24 hybrids
Organism:
Arabidopsis thaliana
Type:
Genome variation profiling by genome tiling array; Genome binding/occupancy profiling by genome tiling array
Platform:
GPL10772
8 Samples
Download data: GPR
Series
Accession:
GSE25060
ID:
200025060
8.

h3k27me3_col(c24)-Analysis of epigenomic changes in hybrids Arabidopsis thaliana Col-0, C24 and Cvi accessions

(Submitter supplied) a2e_heterosis - h3k27me3_col(c24) - Arabidopsis thaliana accessions (Col-0, C24 and Cvi) and their hybrid were used to investigate the dynamics of the epigenome after intraspecific hybridization between - H3K27me3 profiling in Col
Organism:
Arabidopsis thaliana
Type:
Genome variation profiling by genome tiling array; Genome binding/occupancy profiling by genome tiling array
Platforms:
GPL10920 GPL10919
8 Samples
Download data: PAIR
Series
Accession:
GSE25059
ID:
200025059
9.

h3k27me3_c24-Analysis of epigenomic changes in hybrids Arabidopsis thaliana Col-0, C24 and Cvi accessions

(Submitter supplied) a2e_heterosis - h3k27me3_c24 - Arabidopsis thaliana accessions (Col-0, C24 and Cvi) and their hybrid were used to investigate the dynamics of the epigenome after intraspecific hybridization between - H3K27me3 profiling in C24
Organism:
Arabidopsis thaliana
Type:
Genome variation profiling by genome tiling array; Genome binding/occupancy profiling by genome tiling array
Platforms:
GPL10919 GPL10920
7 Samples
Download data: PAIR
Series
Accession:
GSE25058
ID:
200025058
10.

h3k27me3_colxc24-Analysis of epigenomic changes in hybrids Arabidopsis thaliana Col-0, C24 and Cvi accessions

(Submitter supplied) a2e_heterosis - h3k27me3_colxc24 - Arabidopsis thaliana accessions (Col-0, C24 and Cvi) and their hybrid were used to investigate the dynamics of the epigenome after intraspecific hybridization between - H3K27me3 profiling in ColxC24 hybrids
Organism:
Arabidopsis thaliana
Type:
Genome variation profiling by genome tiling array; Genome binding/occupancy profiling by genome tiling array
Platforms:
GPL10920 GPL10919
8 Samples
Download data: PAIR
Series
Accession:
GSE25057
ID:
200025057
11.

h3k4me2_col(cvi)-Analysis of epigenomic changes in hybrids Arabidopsis thaliana Col-0, C24 and Cvi accessions

(Submitter supplied) a2e_heterosis - h3k4me2_col(cvi) - Arabidopsis thaliana accessions (Col-0, C24 and Cvi) and their hybrid were used to investigate the dynamics of the epigenome after intraspecific hybridization between - H3K4me2 profiling in Col-0
Organism:
Arabidopsis thaliana
Type:
Genome variation profiling by genome tiling array; Genome binding/occupancy profiling by genome tiling array
Platforms:
GPL10919 GPL10920
8 Samples
Download data: PAIR
Series
Accession:
GSE25056
ID:
200025056
12.

h3k4me2_cvi-Analysis of epigenomic changes in hybrids Arabidopsis thaliana Col-0, C24 and Cvi accessions

(Submitter supplied) a2e_heterosis - h3k4me2_cvi - Arabidopsis thaliana accessions (Col-0, C24 and Cvi) and their hybrid were used to investigate the dynamics of the epigenome after intraspecific hybridization between - H3K4me2 profiling in Cvi
Organism:
Arabidopsis thaliana
Type:
Genome variation profiling by genome tiling array; Genome binding/occupancy profiling by genome tiling array
Platforms:
GPL10920 GPL10919
8 Samples
Download data: PAIR
Series
Accession:
GSE25054
ID:
200025054
13.

h3k4me2_colxcvi-Analysis of epigenomic changes in hybrids Arabidopsis thaliana Col-0, C24 and Cvi accessions

(Submitter supplied) a2e_heterosis - h3k4me2_colxcvi - Arabidopsis thaliana accessions (Col-0, C24 and Cvi) and their hybrid were used to investigate the dynamics of the epigenome after intraspecific hybridization between - H3K4me2 profiling in ColxCvi hybrids
Organism:
Arabidopsis thaliana
Type:
Genome variation profiling by genome tiling array; Genome binding/occupancy profiling by genome tiling array
Platforms:
GPL10920 GPL10919
8 Samples
Download data: PAIR
Series
Accession:
GSE25053
ID:
200025053
14.

h3k27me3_col(cvi)-Analysis of epigenomic changes in hybrids Arabidopsis thaliana Col-0, C24 and Cvi accessions

(Submitter supplied) a2e_heterosis - h3k27me3_col(cvi) - Arabidopsis thaliana accessions (Col-0, C24 and Cvi) and their hybrid were used to investigate the dynamics of the epigenome after intraspecific hybridization between - H3K27me3 profiling in Col
Organism:
Arabidopsis thaliana
Type:
Genome variation profiling by genome tiling array; Genome binding/occupancy profiling by genome tiling array
Platforms:
GPL10920 GPL10919
7 Samples
Download data: PAIR
Series
Accession:
GSE25052
ID:
200025052
15.

h3k27me3_cvi-Analysis of epigenomic changes in hybrids Arabidopsis thaliana Col-0, C24 and Cvi accessions

(Submitter supplied) a2e_heterosis - h3k27me3_cvi - Arabidopsis thaliana accessions (Col-0, C24 and Cvi) and their hybrid were used to investigate the dynamics of the epigenome after intraspecific hybridization between - H3K27me3 profiling in Cvi seedlings
Organism:
Arabidopsis thaliana
Type:
Genome variation profiling by genome tiling array; Genome binding/occupancy profiling by genome tiling array
Platforms:
GPL10919 GPL10920
8 Samples
Download data: PAIR
Series
Accession:
GSE25051
ID:
200025051
16.

h3k27me3_colxcvi-Analysis of epigenomic changes in hybrids Arabidopsis thaliana Col-0, C24 and Cvi accessions

(Submitter supplied) a2e_heterosis - h3k27me3_colxcvi - Arabidopsis thaliana accessions (Col-0, C24 and Cvi) and their hybrid were used to investigate the dynamics of the epigenome after intraspecific hybridization between - H3K27me3 profiling in ColxCvi hybrids
Organism:
Arabidopsis thaliana
Type:
Genome variation profiling by genome tiling array; Genome binding/occupancy profiling by genome tiling array
Platforms:
GPL10920 GPL10919
8 Samples
Download data: PAIR
Series
Accession:
GSE25050
ID:
200025050
17.

h3k4me2_c24_chr4-Analysis of epigenomic changes in hybrids Arabidopsis thaliana Col-0, C24 and Cvi accessions

(Submitter supplied) a2e_heterosis - h3k4me2_c24_chr4 - Arabidopsis thaliana accessions (Col-0, C24 and Cvi) and their hybrid were used to investigate the dynamics of the epigenome after intraspecific hybridization between - H3K4me2 profiling in C24
Organism:
Arabidopsis thaliana
Type:
Genome variation profiling by genome tiling array; Genome binding/occupancy profiling by genome tiling array
Platform:
GPL10772
8 Samples
Download data: GPR
Series
Accession:
GSE25049
ID:
200025049
18.

Analysis of epigenomic changes in hybrids Arabidopsis thaliana Col-0, C24 and Cvi accessions

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.
Organism:
Arabidopsis thaliana
Type:
Genome variation profiling by genome tiling array; Genome binding/occupancy profiling by genome tiling array
Platforms:
GPL10920 GPL10919 GPL10772
104 Samples
Download data: GPR, PAIR
Series
Accession:
GSE24836
ID:
200024836
19.

cgh_colvscvi_wg-Analysis of epigenomic changes in hybrids Arabidopsis thaliana Col-0, C24 and Cvi accessions

(Submitter supplied) a2e_heterosis - cgh_colvscvi_wg - Arabidopsis thaliana accessions (Col-0, C24 and Cvi) and their hybrid were used to investigate the dynamics of the epigenome after intraspecific hybridization between - Comparative genome hybridization between Arabidopsis thaliana accessions Col-0 and CVi.
Organism:
Arabidopsis thaliana
Type:
Genome variation profiling by genome tiling array
Platforms:
GPL10919 GPL10920
4 Samples
Download data: PAIR
Series
Accession:
GSE24835
ID:
200024835
20.

cgh_colvsc24_wg-Analysis of epigenomic changes in hybrids Arabidopsis thaliana Col-0, C24 and Cvi accessions

(Submitter supplied) a2e_heterosis - cgh_colvsc24_wg - Arabidopsis thaliana accessions (Col-0, C24 and Cvi) and their hybrid were used to investigate the dynamics of the epigenome after intraspecific hybridization between - Comparative genome hybridization between Arabidopsis thaliana accessions Col-0 and C24.
Organism:
Arabidopsis thaliana
Type:
Genome variation profiling by genome tiling array
Platforms:
GPL10920 GPL10919
2 Samples
Download data: PAIR
Series
Accession:
GSE24831
ID:
200024831
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