GEO DataSets

(Submitter supplied) We investigate tissue transcriptomic evolution across bilaterian animals by analyzing RNA-seq data from eight different tissues across twenty species.

Organism:

Blattella germanica; Strongylocentrotus purpuratus; Octopus bimaculoides; Strigamia maritima; Branchiostoma lanceolatum; Danio rerio; Bombyx mori; Drosophila melanogaster; Callorhinchus milii; Monodelphis domestica; Episyrphus balteatus; Tribolium castaneum; Aedes aegypti; Xenopus tropicalis; Cloeon dipterum

Type:

Expression profiling by high throughput sequencing

15 related Platforms

89 Samples

Download data: TSV

(Submitter supplied) Cephalopods have a remarkable visual system, with a camera-type eye, high acuity vision, and a wide range of sophisticated visual behaviors. However, the cephalopod brain is organized dramatically differently from that of vertebrates, as well as other invertebrates, and little is known regarding the cell types and molecular determinants of their visual system organization beyond neuroanatomical descriptions. more...

Organism:

Octopus bimaculoides

Type:

Expression profiling by high throughput sequencing

Platforms:

GPL25425 GPL32623

4 Samples

Download data: MTX, TSV

(Submitter supplied) This study was carried out to investigate the gene expression profile from arm and hatchlings transcriptome across multiple individual Octopus bimaculoides .

Organism:

Octopus bimaculoides

Type:

Expression profiling by high throughput sequencing

Platform:

GPL30957

6 Samples

Download data: TSV

(Submitter supplied) Transcriptome profiling of Octopus nervous systems and associated structures provides insights into the molecular organization of neuronal complexity and behavioral flexibility. RNA-seq also highlights molecular diversity in cell signaling pathways.

Organism:

Octopus bimaculoides

Type:

Expression profiling by high throughput sequencing

Platforms:

GPL25425 GPL25424

95 Samples

Download data: TXT

(Submitter supplied) The brain requires complex mechanisms of genome regulation to encode and store behavioural information. In mammals, DNA methylation deposited at non-CG dinucleotides characterises brain epigenomes. However, it is unclear to what extent this non-canonical form of DNA methylation is evolutionarily conserved. To test this we profile brain cytosine methylation across the major vertebrate lineages, amphioxus, honeybee and octopus, finding that non-CG methylation in adult brain methylomes is restricted to vertebrates. more...

Organism:

Danio rerio; Monodelphis domestica; Apis mellifera; Callorhinchus milii; Octopus bimaculoides; Branchiostoma lanceolatum; Gallus gallus; Ornithorhynchus anatinus; Lethenteron camtschaticum

Type:

Expression profiling by high throughput sequencing; Methylation profiling by high throughput sequencing

9 related Platforms

11 Samples

Download data: CGMAP, TSV

(Submitter supplied) We performed paired end Illumina Hiseq on bulk tissues of Octopus bimaculoides sensory tissues, Libaries were sequenced on two different Lanes

Organism:

Octopus bimaculoides

Type:

Expression profiling by high throughput sequencing

Platform:

GPL29060

16 Samples

Download data: CSV, FA