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Items: 3

1.

Chromosomal domain formation by archaeal SMC, a roadblock protein, and DNA shape [3C-seq]

(Submitter supplied) Structural maintenance of chromosomes (SMC) complexes fold genomes by extruding DNA loops. In eukaryotes, loop-extruding SMC complexes form topologically associating domains (TADs) by being stalled by roadblock proteins. It remains unclear whether a similar mechanism of domain formation exists in prokaryotes. Using high-resolution chromosome conformation capture sequencing, we show that an archaeal homolog of the bacterial Smc-ScpAB complex organizes the genome of Thermococcus kodakarensis into TAD-like domains. more...
Organism:
Thermococcus kodakarensis; Thermoplasma acidophilum
Type:
Other
4 related Platforms
29 Samples
Download data: TXT
Series
Accession:
GSE267297
ID:
200267297

2.

Illumina NovaSeq 6000 (Thermococcus kodakarensis)

Organism:
Thermococcus kodakarensis
4 Series
62 Samples
Download data
Platform
Accession:
GPL28196
ID:
100028196

3.

3C_Tko_smc_rep1

Organism:
Thermococcus kodakarensis
Source name:
KOD1
Platform:
GPL28196
Series:
GSE267297
Download data: TXT
Sample
Accession:
GSM8263582
ID:
308263582

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db=gds|term=GSM8263582[Accession]|query=1|qty=3|blobid=MCID_676b4daf0bdf8a6e731f221a|ismultiple=true|min_list=5|max_list=20|def_tree=20|def_list=|def_view=|url=/Taxonomy/backend/subset.cgi?|trace_url=/stat?
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