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Items: 3

1.

Spatial transcriptomics revealing host-microbe interactions

(Submitter supplied) We developed an analysis pipeline that can extract microbial sequences from Spatial Transcriptomic (ST) data and assign taxonomic labels, generating a spatial microbial abundance matrix in addition to the default host expression matrix, enabling simultaneous analysis of host expression and microbial distribution. We called the pipeline Spatial Meta-transcriptome (SMT) and applied it on both human and murine intestinal sections and validated the spatial microbial abundance information with alternative assays. more...
Organism:
mouse gut metagenome; Mus musculus
Type:
Other
Platforms:
GPL32553 GPL32554
10 Samples
Download data: PNG, RDS, TAR, TSV
Series
Accession:
GSE210738
ID:
200210738

2.

Illumina NovaSeq 6000 (mouse gut metagenome)

Organism:
mouse gut metagenome
3 Series
25 Samples
Download data
Platform
Accession:
GPL32553
ID:
100032553

3.

SI_bulk1

Organism:
mouse gut metagenome
Source name:
small intestine
Platform:
GPL32553
Series:
GSE210738
Download data
Sample
Accession:
GSM6436180
ID:
306436180

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db=gds|term=GSM6436180[Accession]|query=1|qty=3|blobid=MCID_676c3eb57eb86f557fe3d4da|ismultiple=true|min_list=5|max_list=20|def_tree=20|def_list=|def_view=|url=/Taxonomy/backend/subset.cgi?|trace_url=/stat?
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