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Items: 3

1.

A simple, cost-effective, and robust method for rRNA depletion in RNA-sequencing studies

(Submitter supplied) These experiments were designed to quantify depletion of rRNA sequencing reads from bacterial RNA-seq libraries and verify that mRNA sequencing reads were not altered. Specifically, we tested an rRNA depletion method using custom-designed biotinylated oligonucleotides and compared these results to undepleted (total RNA) libraries and libraries made with the previously-available Ribo-Zero kit (Illumina).
Organism:
Caulobacter vibrioides; Escherichia coli; Bacillus subtilis
Type:
Expression profiling by high throughput sequencing
4 related Platforms
12 Samples
Download data: CSV
Series
Accession:
GSE142656
ID:
200142656

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2.

Illumina MiSeq (Bacillus subtilis)

Organism:
Bacillus subtilis
8 Series
44 Samples
Download data
Platform
Accession:
GPL21373
ID:
100021373

3.

Bsubtilis_diy_depletion

Organism:
Bacillus subtilis
Source name:
Bacterial liquid culture
Platform:
GPL21373
Series:
GSE142656
Download data: CSV
Sample
Accession:
GSM4237297
ID:
304237297

SRA Run Selector

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db=gds|term=GSM4237297[Accession]|query=1|qty=4|blobid=MCID_674f775b2ced8a147a26f63c|ismultiple=true|min_list=5|max_list=20|def_tree=20|def_list=|def_view=|url=/Taxonomy/backend/subset.cgi?|trace_url=/stat?
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