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Items: 3

1.

Oncogenic extrachromosomal DNA functions as mobile enhancers to globally amplify chromosomal transcription

(Submitter supplied) Extrachromosomal, circular DNA (ecDNA) is emerging as a prevalent yet less characterized oncogenic alteration in cancer genomes. We leverage ChIA-PET and ChIA-Drop chromatin interaction assays to characterize genome-wide ecDNA-mediated chromatin contacts that impact transcriptional programs in cancers. ecDNAs in glioblastoma patient-derived neurosphere and prostate cancer cell cultures are marked by widespread intra-ecDNA and genome-wide chromosomal interactions. more...
Organism:
Homo sapiens
Type:
Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Other
4 related Platforms
49 Samples
Download data: BW, DIFF, FPKM_TRACKING, NARROWPEAK, TXT
Series
Accession:
GSE124769
ID:
200124769

PubMed Full text in PMC Similar studies Analyze with GEO2RSRA Run Selector

2.

Illumina NextSeq 500 (Homo sapiens)

Organism:
Homo sapiens
12626 Series
344233 Samples
Download data
Platform
Accession:
GPL18573
ID:
100018573

3.

HF-2927_RNAseq_rep2

Organism:
Homo sapiens
Source name:
Glioblastoma neurosphere cell suspensions
Platform:
GPL18573
Series:
GSE124769
Download data
Sample
Accession:
GSM3553644
ID:
303553644

SRA Run Selector

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db=gds|term=GSM3553644[Accession]|query=1|qty=2|blobid=MCID_674f974368e51b28f584391d|ismultiple=true|min_list=5|max_list=20|def_tree=20|def_list=|def_view=|url=/Taxonomy/backend/subset.cgi?|trace_url=/stat?
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