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Items: 3

1.

Antisense lncRNA transcription mediates DNA demethylation to drive stochastic Protocadherin α promoter choice

(Submitter supplied) Stochastic activation of clustered Protocadherin (Pcdh) α, β, and γ genes generates a cell-surface identity code in individual neurons that functions in neural circuit assembly. Here, we show that Pcdhα gene choice involves the activation of an antisense promoter located in the first exon of each Pcdhα alternate gene. Transcription of an antisense long noncoding RNA (lncRNA) from this antisense promoter extends through the sense promoter, leading to DNA demethylation of the CTCF binding sites proximal to each promoter. more...
Organism:
Homo sapiens; Mus musculus
Type:
Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Other
Platforms:
GPL21697 GPL21626
72 Samples
Download data: BW, HIC
Series
Accession:
GSE115862
ID:
200115862
2.

NextSeq 550 (Homo sapiens)

Platform
Accession:
GPL21697
ID:
100021697
3.

HEK_a4eCBS_dCas9-VPR_ChIPSeq

Organism:
Homo sapiens
Source name:
HEK293T cells transfected with dCas9 targeting the eCBS of Pcdha4
Platform:
GPL21697
Series:
GSE115862
Download data: BW
Sample
Accession:
GSM3192047
ID:
303192047
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db=gds|term=GSM3192047[Accession]|query=1|qty=3|blobid=MCID_674c24bd96d9ad04061fb5ac|ismultiple=true|min_list=5|max_list=20|def_tree=20|def_list=|def_view=|url=/Taxonomy/backend/subset.cgi?|trace_url=/stat?
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