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Items: 4

1.

Comprehensive performance comparison of high-resolution array platforms for genome-wide Copy Number Variation (CNV) analysis in humans

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.
Organism:
Homo sapiens
Type:
Genome variation profiling by SNP array; Genome variation profiling by genome tiling array
15 related Platforms
30 Samples
Download data: CEL, IDAT, TXT
Series
Accession:
GSE96909
ID:
200096909
2.

Comprehensive performance comparison of high-resolution array platforms for genome-wide Copy Number Variation (CNV) analysis in humans [IlluminaHumanCoreExome]

(Submitter supplied) Background: High-resolution microarray technology is routinely used in basic research and clinical practice to efficiently detect copy number variants (CNVs) across the entire human genome. A new generation of arrays combining high probe densities with optimized designs will comprise essential tools for genome analysis in the coming years. We systematically compared the genome-wide CNV detection power of all 17 available array designs from the Affymetrix, Agilent, and Illumina platforms by hybridizing the well-characterized genome of 1000 Genomes Project subject NA12878 to all arrays, and performing data analysis using both manufacturer-recommended and platform-independent software. more...
Organism:
Homo sapiens
Type:
Genome variation profiling by SNP array
Platform:
GPL23195
2 Samples
Download data: IDAT, TXT
Series
Accession:
GSE96816
ID:
200096816
3.

Illumna HumanCoreExome-12_v1.1_C

(Submitter supplied) See manufacturer's website
Organism:
Homo sapiens
3 Series
13 Samples
Download data: CSV
Platform
Accession:
GPL23195
ID:
100023195
4.

NA12878 Genomic DNA Replicate 1 (IlluminaHumanCoreExome)

Organism:
Homo sapiens
Source name:
Blood, B Lymphocyte
Platform:
GPL23195
Series:
GSE96816 GSE96909
Download data: IDAT, TXT
Sample
Accession:
GSM2544622
ID:
302544622
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