GEO DataSets

(Submitter supplied) We report the application of high-throughput sequencing to performed the p53 regulated trancriptome in HCT116 colon cancer cells treated with the DNA damage 5FU. To study the direct targets of p53 we performed ChIP-seq to deterrmined the p53 biding sites and associated with the expression levels. With this study we identified the new genomic regions regulated by p53 and with special attention in those regions that are significally expressed by DNA damage and and are non- coding.

Organism:

Homo sapiens

Type:

Expression profiling by array

Platform:

GPL17586

9 Samples

Download data: CEL

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.

Organism:

Homo sapiens

Type:

Expression profiling by array; Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing

Platforms:

GPL9052 GPL17586 GPL11154

15 Samples

Download data: CEL, TXT, WIG

(Submitter supplied) #%create_date=Wed Jan 22 15:39:59 2014 PST #%chip_type=HTA-2_0 #%lib_set_name=HTA-2_0 #%lib_set_version=r1 #%genome-species=Homo sapiens #%genome-version=hg19 #%genome-version-ucsc=hg19 #%genome-version-ncbi=GRCh37 #%genome-version-create_date=2009-02-00 #%genome-lifted-method=psl-map.pl #%genome-lifted_from-species=Homo sapiens #%genome-lifted_from-version-ucsc=hg19 #%genome-lifted_from-version-ncbi=GRCh37 #%netaffx-annotation-date=2013-10-15 #%netaffx-annotation-netaffx-build=34 Protocol: See manufacturers website

Organism:

Homo sapiens

639 Series

11 Related Platforms

19413 Samples

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