GSM1306279[Accession] - GEO DataSets

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Items: 3

Select item 2000540401.

Development of a Fluorescence-Activated Cell Sorting Method Coupled with Whole Genome Amplification To Analyze Minority and Trace Dehalococcoides Genomes in Microbial Communities

(Submitter supplied) Dehalococcoides mccartyi are functionally important bacteria that catalyze the reductive dechlorination of chlorinated ethenes. However, these anaerobic bacteria are fastidious to isolate, making downstream genomic characterization challenging. In order to facilitate genomic analysis, a fluorescence-activated cell sorting (FACS) method was developed in this study to separate D. mccartyi cells from a microbial community, and the DNA of the isolated cells was processed by whole genome amplification (WGA) and hybridized onto a D. more...

Organism:: Dehalococcoides mccartyi 195; Dehalococcoides mccartyi BAV1; Dehalococcoides mccartyi CBDB1; Dehalococcoides mccartyi VS

Type:: Genome variation profiling by array

Platform:: GPL10838
21 Samples

Download data: CEL, CHP

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Accession:: GSE54040

ID:: 200054040

Select item 1000108382.

[4dehalosa520666F] Affymetrix Dehalococcoides genus 4.8K array

(Submitter supplied) A microarray targeting genes from all available sequenced genomes of the Dehalococcoides genus was designed with 4305 probe sets to target 98.6% of all genes from strains 195, CBDB1, BAV1, and VS. Protocol: Affymetrix Prokaryotic Sample and Array Processing protocol; 100 Format (Midi)