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Items: 4

1.

A comprehensive assessment of RNA-seq accuracy, reproducibility and information content by the Sequence Quality Control consortium

(Submitter supplied) We present primary results from the Sequencing Quality Control (SEQC) project, coordinated by the United States Food and Drug Administration. Examining Illumina HiSeq, Life Technologies SOLiD and Roche 454 platforms at multiple laboratory sites using reference RNA samples with built-in controls, we assess RNA sequencing (RNA-seq) performance for sequence discovery and differential expression profiling and compare it to microarray and quantitative PCR (qPCR) data using complementary metrics. more...
Organism:
Homo sapiens; synthetic construct
Type:
Expression profiling by high throughput sequencing
5 related Platforms
3396 Samples
Download data: TXT
Series
Accession:
GSE47774
ID:
200047774
2.

SEQC Project

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.
Organism:
Homo sapiens; Rattus norvegicus; synthetic construct
Type:
Expression profiling by array; Expression profiling by high throughput sequencing
15 related Platforms
4521 Samples
Download data: CEL, TXT
Series
Accession:
GSE47792
ID:
200047792
3.

Illumina HiSeq 2000 (synthetic construct)

Organism:
synthetic construct
48 Series
1879 Samples
Download data
Platform
Accession:
GPL15228
ID:
100015228
4.

SEQC_ILM_BGI_E_1_L06_GTCCGC_BC0AYPACXX

Organism:
synthetic construct
Source name:
Ambion ERCC Spike-In Control Mix 1
Platform:
GPL15228
Series:
GSE47774 GSE47792
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Sample
Accession:
GSM1157128
ID:
301157128
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Supplemental Content

db=gds|term=GSM1157128[Accession]|query=1|qty=4|blobid=MCID_67597125df415c74f8c26f50|ismultiple=true|min_list=5|max_list=20|def_tree=20|def_list=|def_view=|url=/Taxonomy/backend/subset.cgi?|trace_url=/stat?
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