GSE84888[Accession] - GEO DataSets - NCBI

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Distinct roles for motif affinity, chromatin state, and co-regulatory motifs in PPARγ binding and enhancer activity

(Submitter supplied) Sequence-specific transcription factors (TFs) regulate gene expression by binding to cognate motifs in promoters and enhancers. However, predicting genomic TF binding events and their quantitative contribution to expression remains a major challenge. In principle, the binding and enhancer activity of specific sites in vivo might depend on: (i) latent properties of the motif instance, (ii) cooperative interactions with other TFs that bind in the immediate vicinity, and (iii) the chromatin state of the sites in the genome. more...

Organism:: synthetic construct; Mus musculus

Type:: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Other

4 related Platforms
21 Samples

Download data: TXT

Series

Accession:: GSE84888

ID:: 200084888

PubMed Full text in PMC Similar studies SRA Run Selector

Select item 1000177692.

Illumina MiSeq (synthetic construct)

Organism:: synthetic construct

102 Series
1233 Samples

Platform

Accession:: GPL17769

ID:: 100017769

Select item 1000164173.

Illumina MiSeq (Mus musculus)

Organism:: Mus musculus

940 Series
22269 Samples

Platform

Accession:: GPL16417

ID:: 100016417

Select item 1000152284.

Illumina HiSeq 2000 (synthetic construct)

Organism:: synthetic construct

48 Series
1879 Samples

Platform

Accession:: GPL15228

ID:: 100015228

Select item 1000131125.

Illumina HiSeq 2000 (Mus musculus)

Organism:: Mus musculus

8355 Series
188858 Samples

Platform

Accession:: GPL13112

ID:: 100013112

Select item 3022531676.

Organism:: synthetic construct

Source name:: plasmid DNA

Platform:: GPL17769
Series:: GSE84888

Download data: TXT

Sample

Accession:: GSM2253167

ID:: 302253167

SRA Run Selector

Select item 3022531667.

Organism:: synthetic construct

Source name:: plasmid DNA

Platform:: GPL17769
Series:: GSE84888

Download data: TXT

Sample

Accession:: GSM2253166

ID:: 302253166

SRA Run Selector

Select item 3022531658.

Organism:: synthetic construct

Source name:: plasmid DNA

Platform:: GPL17769
Series:: GSE84888

Download data: TXT

Sample

Accession:: GSM2253165

ID:: 302253165

SRA Run Selector

Select item 3022531639.

Organism:: Mus musculus

Source name:: 3T3-L1 cell line

Platform:: GPL13112
Series:: GSE84888

Sample

Accession:: GSM2253163

ID:: 302253163

SRA Run Selector

Select item 30225316110.

Organism:: Mus musculus

Source name:: 3T3-L1 cell line

Platform:: GPL13112
Series:: GSE84888

Sample

Accession:: GSM2253161

ID:: 302253161

SRA Run Selector

Select item 30225315911.

Organism:: Mus musculus

Source name:: 3T3-L1 cell line

Platform:: GPL13112
Series:: GSE84888

Sample

Accession:: GSM2253159

ID:: 302253159

SRA Run Selector

Select item 30225315712.

Organism:: Mus musculus

Source name:: 3T3-L1 cell line

Platform:: GPL13112
Series:: GSE84888

Download data: TXT

Sample

Accession:: GSM2253157

ID:: 302253157

SRA Run Selector

Select item 30225315513.

Organism:: Mus musculus

Source name:: 3T3-L1 cell line

Platform:: GPL13112
Series:: GSE84888

Download data: TXT

Sample

Accession:: GSM2253155

ID:: 302253155

SRA Run Selector

Select item 30225315314.

Organism:: Mus musculus

Source name:: 3T3-L1 cell line

Platform:: GPL13112
Series:: GSE84888

Download data: TXT

Sample

Accession:: GSM2253153

ID:: 302253153

SRA Run Selector

Select item 30225315115.

Organism:: Mus musculus

Source name:: 3T3-L1 cell line

Platform:: GPL13112
Series:: GSE84888

Download data: TXT

Sample

Accession:: GSM2253151

ID:: 302253151

SRA Run Selector

Select item 30225317116.

Organism:: Mus musculus

Source name:: 3T3-L1 cell line

Platform:: GPL16417
Series:: GSE84888

Sample

Accession:: GSM2253171

ID:: 302253171

SRA Run Selector

Select item 30225317017.

Organism:: Mus musculus

Source name:: 3T3-L1 cell line

Platform:: GPL16417
Series:: GSE84888

Sample

Accession:: GSM2253170

ID:: 302253170

SRA Run Selector

Select item 30225316918.

Organism:: Mus musculus

Source name:: 3T3-L1 cell line

Platform:: GPL16417
Series:: GSE84888

Sample

Accession:: GSM2253169

ID:: 302253169

SRA Run Selector

Select item 30225316819.

Organism:: Mus musculus

Source name:: 3T3-L1 cell line

Platform:: GPL16417
Series:: GSE84888

Sample

Accession:: GSM2253168

ID:: 302253168

SRA Run Selector

Select item 30225316420.

Organism:: synthetic construct

Source name:: plasmid DNA

Platform:: GPL15228
Series:: GSE84888

Sample

Accession:: GSM2253164

ID:: 302253164

SRA Run Selector

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