GEO DataSets

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.

Organism:

Homo sapiens; Mus musculus; Rattus norvegicus; synthetic construct

Type:

Expression profiling by array; Non-coding RNA profiling by array; Methylation profiling by genome tiling array

14 related Platforms

2666 Samples

Download data: CEL, CSV, PAIR, TXT

(Submitter supplied) Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html June 03, 2009: annotation table updated with netaffx build 28 June 07, 2012: annotation table updated with netaffx build 32 June 23, 2016: annotation table updated with netaffx build 35 Protocol: see manufacturer's web site All probe sets represented on the GeneChip Mouse Expression Set 430 are included on the GeneChip Mouse Genome 430 2.0 Array. more...

Organism:

Mus musculus

601 DataSets

4546 Series

40 Related Platforms

58941 Samples

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(Submitter supplied) Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html June 03, 2009: annotation table updated with netaffx build 28 June 07, 2012: annotation table updated with netaffx build 32 June 27, 2016: annotation table updated with netaffx build 35 Protocol: see manufacturer's web site The GeneChip Rat Genome 230 2.0 Array is a powerful tool for toxicology, neurobiology, and other applications using rat as a model organism. more...

Organism:

Rattus norvegicus

107 DataSets

750 Series

13 Related Platforms

23059 Samples

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(Submitter supplied) Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html June 03, 2009: annotation table updated with netaffx build 28 June 21, 2012: annotation table updated with netaffx build 32 July 01, 2016: annotation table updated with netaffx build 35 Protocol: see manufacturer's web site Array A of GeneChip Rat Expression Set 230 Has 15923 entries and was indexed 09-Apr-2003 Sequences used in the design of the array were selected from GenBank, dbEST, and RefSeq. more...

Organism:

Rattus norvegicus

68 DataSets

148 Series

2 Related Platforms

3292 Samples

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(Submitter supplied) Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html June 03, 2009: annotation table updated with netaffx build 28 June 08, 2012: annotation table updated with netaffx build 32 July 01, 2016: annotation table updated with netaffx build 35 Protocol: see manufacturer's web site The GeneChip Mouse Genome 430A 2.0 Array is a single array representing approximately 14,000 well-characterized mouse genes that can be used to explore biology and disease processes. more...

Organism:

Mus musculus

66 DataSets

523 Series

2 Related Platforms

6974 Samples

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(Submitter supplied) Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html This is identical to GPL17117 but a custom CDF environment was used to extract data [Brainarray Version 19, ragene20st_Rn_ENST ENST_19.0.0]. CDF and other files can be downloaded at: http://brainarray.mbni.med.umich.edu/Brainarray/Database/CustomCDF/CDF_download.asp Protocol: See manufacturer's web site

Organism:

Rattus norvegicus

2 Series

1 Related Platform

123 Samples

Download data: CDF, TXT

(Submitter supplied) This platform is identical to GPL13158 but a custom cdf environment was used to extract data. GRCh38 Protocol: see manufacturer's web site

Organism:

Homo sapiens

3 Series

120 Samples

Download data: CDF, TXT

(Submitter supplied) protein or protein modifications Protocol: http://www.zeptosens.com/en/

Organism:

Mus musculus

5 Series

79 Samples

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(Submitter supplied) Rat miRNA Microarray 1.0 Protocol: see manufacturer's web site at http://www.agilent.com/

Organism:

Rattus norvegicus

7 Series

172 Samples

Download data: TXT

(Submitter supplied) SurePrint G3 Rat GE 8x60K Microarray Arrays of this design have barcodes that begin with 16028279 or 2528279. *** The ID column includes the Agilent Probe Names. A different version of this platform with the Agilent Feature Extraction feature numbers in the ID column is assigned accession number GPL14797 Protocol: see manufacturer's web site at http://www.agilent.com/

Organism:

Rattus norvegicus

81 Series

1 Related Platform

1409 Samples

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(Submitter supplied) Rat miRNAs miRBase Release 16.0. Protocol: See manufacturer's web site at http://www.agilent.com/ .

Organism:

Rattus norvegicus

25 Series

1 Related Platform

369 Samples

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(Submitter supplied) #%create_date=Wed Dec 22 13:03:44 PST 2010 #%guid=04795ed5-9038-4dff-957e-da346791f552 #%chip_type=miRNA-2_0 # File order is all miRNAs that have mapping information grouped by organism, then all miRNAs without mapping information grouped by organism, then all sno/sca from UCSC and ensembl, and lastly the controls. # miRNAs: # An annot name generally represents one genome location," but may refer to multiple annotations because of multiple mature products delineated by ""-3p"" and ""-5p"""," or "".1"" and "".2""." # Also, those with a '*' are minor products, and those without '*' or any other aforementioned suffix are considered the major product. more...

Organism:

synthetic construct

187 Series

3459 Samples

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(Submitter supplied) Mouse miRNA Microarray 2.0 Orientation: Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software. *** The ID column represents the miRNA_ID. A different version of this platform with the Agilent Feature Extraction feature numbers in the ID column is assigned accession number GPL10384. more...

Organism:

Mus musculus

28 Series

1 Related Platform

510 Samples

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(Submitter supplied) Agilent 8x15K mouse miRNA microarray Protocol: see manufacturer's web site

Organism:

Mus musculus

35 Series

1 Related Platform

286 Samples

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(Submitter supplied) Source: UCSC Build: MM8 Probe Length: 50-75mer Promoter Upstream Tiling (bp): 1300 Promoter Downstream Tiling (bp): 500 Protocol: See www.nimblegen.com

Organism:

Mus musculus

9 Series

119 Samples

Download data: NDF, POS