GSE60104[Accession] - GEO DataSets - NCBI

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Global ChIP-seq Normalization Reveals Epigenome Modulations

(Submitter supplied) Epigenomic profiling by ChIP-seq is a prevailing methodology used to investigate chromatin-based regulation in biological systems, such as human disease, yet the lack of an empirical methodology to normalize amongst experiments has limited the usefulness of this technique. Here we describe a “spike-in” normalization method that allows the quantitative comparison of histone modification status across cell populations using defined quantities of a reference epigenome. more...

Organism:: Homo sapiens; Drosophila melanogaster

Type:: Genome binding/occupancy profiling by high throughput sequencing

Platforms:: GPL11154 GPL13304
48 Samples

Download data: TDF

Series

Accession:: GSE60104

ID:: 200060104

PubMed Similar studies SRA Run Selector

Select item 1000133042.

Illumina HiSeq 2000 (Drosophila melanogaster)

Organism:: Drosophila melanogaster

910 Series
18316 Samples

Platform

Accession:: GPL13304

ID:: 100013304

Select item 1000111543.

Illumina HiSeq 2000 (Homo sapiens)

Organism:: Homo sapiens

10560 Series
183756 Samples

Platform

Accession:: GPL11154

ID:: 100011154

Select item 3015114784.

Organism:: Homo sapiens

Source name:: AML

Platform:: GPL11154
Series:: GSE60104

Download data: TDF

Sample

Accession:: GSM1511478

ID:: 301511478

SRA Run Selector

Select item 3015114775.

Organism:: Homo sapiens

Source name:: AML

Platform:: GPL11154
Series:: GSE60104

Download data: TDF

Sample

Accession:: GSM1511477

ID:: 301511477

SRA Run Selector

Select item 3015114766.

MV4;11_WCE_0.5nM

Organism:: Homo sapiens

Source name:: AML

Platform:: GPL11154
Series:: GSE60104

Download data: TDF

Sample

Accession:: GSM1511476

ID:: 301511476

SRA Run Selector

Select item 3015114757.

Organism:: Homo sapiens

Source name:: AML

Platform:: GPL11154
Series:: GSE60104

Download data: TDF

Sample

Accession:: GSM1511475

ID:: 301511475

SRA Run Selector

Select item 3015114748.

Jurkat_WCE_100%_R2

Organism:: Homo sapiens

Source name:: Peripheral blood cells

Platform:: GPL11154
Series:: GSE60104

Download data: TDF

Sample

Accession:: GSM1511474

ID:: 301511474

SRA Run Selector

Select item 3015114739.

Jurkat_WCE_75%_R2

Organism:: Homo sapiens

Source name:: Peripheral blood cells

Platform:: GPL11154
Series:: GSE60104

Download data: TDF

Sample

Accession:: GSM1511473

ID:: 301511473

SRA Run Selector

Select item 30151147210.

Jurkat_WCE_50%_R2

Organism:: Homo sapiens

Source name:: Peripheral blood cells

Platform:: GPL11154
Series:: GSE60104

Download data: TDF

Sample

Accession:: GSM1511472

ID:: 301511472

SRA Run Selector

Select item 30151147111.

Jurkat_WCE_25%_R2

Organism:: Homo sapiens

Source name:: Peripheral blood cells

Platform:: GPL11154
Series:: GSE60104

Download data: TDF

Sample

Accession:: GSM1511471

ID:: 301511471

SRA Run Selector

Select item 30151147012.

Jurkat_WCE_0%_R2

Organism:: Homo sapiens

Source name:: Peripheral blood cells

Platform:: GPL11154
Series:: GSE60104

Download data: TDF

Sample

Accession:: GSM1511470

ID:: 301511470

SRA Run Selector

Select item 30151146913.

Jurkat_WCE_100%_R1

Organism:: Homo sapiens

Source name:: Peripheral blood cells

Platform:: GPL11154
Series:: GSE60104

Download data: TDF

Sample

Accession:: GSM1511469

ID:: 301511469

SRA Run Selector

Select item 30151146814.

Jurkat_WCE_75%_R1

Organism:: Homo sapiens

Source name:: Peripheral blood cells

Platform:: GPL11154
Series:: GSE60104

Download data: TDF

Sample

Accession:: GSM1511468

ID:: 301511468

SRA Run Selector

Select item 30151146715.

Jurkat_WCE_50%_R1

Organism:: Homo sapiens

Source name:: Peripheral blood cells

Platform:: GPL11154
Series:: GSE60104

Download data: TDF

Sample

Accession:: GSM1511467

ID:: 301511467

SRA Run Selector

Select item 30151146616.

Jurkat_WCE_25%_R1

Organism:: Homo sapiens

Source name:: Peripheral blood cells

Platform:: GPL11154
Series:: GSE60104

Download data: TDF

Sample

Accession:: GSM1511466

ID:: 301511466

SRA Run Selector

Select item 30151146517.

Jurkat_WCE_0%_R1

Organism:: Homo sapiens

Source name:: Peripheral blood cells

Platform:: GPL11154
Series:: GSE60104

Download data: TDF

Sample

Accession:: GSM1511465

ID:: 301511465

SRA Run Selector

Select item 30151146418.

Jurkat_WCE_NoSpike_50%

Organism:: Homo sapiens

Source name:: Peripheral blood cells

Platform:: GPL11154
Series:: GSE60104

Download data: TDF

Sample

Accession:: GSM1511464

ID:: 301511464

SRA Run Selector

Select item 30151146319.

Jurkat_K79_NoSpike_50%

Organism:: Homo sapiens

Source name:: Peripheral blood cells

Platform:: GPL11154
Series:: GSE60104

Download data: TDF

Sample

Accession:: GSM1511463

ID:: 301511463

SRA Run Selector

Select item 30146502020.

Jurkat_K79_NoSpike

Organism:: Homo sapiens

Source name:: Peripheral blood cells

Platform:: GPL11154
Series:: GSE60104

Download data: TDF

Sample

Accession:: GSM1465020

ID:: 301465020

SRA Run Selector

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