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Items: 10

1.

Genome-wide small RNA profiling and mRNA profiling of Xenopus embryos

(Submitter supplied) Here we report on genome-wide small RNA and transcriptome profiling of blastula, gastrula and neurula-stage Xenopus tropicalis embryos using deep sequencing. By combining bioinformatic analysis of the small RNA-seq dataset with experimental validation, we identify novel microRNAs and Piwi-interacting RNAs. We show that microRNA expression is highly dynamic and spatially localized in early embryos in contrast to Piwi-interacting RNAs, and we validate a novel microRNA prediction pipeline. more...
Organism:
Xenopus tropicalis
Type:
Expression profiling by high throughput sequencing; Non-coding RNA profiling by high throughput sequencing
Platform:
GPL13741
8 Samples
Download data: BED
Series
Accession:
GSE38605
ID:
200038605

PubMed Full text in PMC Similar studies SRA Run Selector

2.

Illumina Genome Analyzer IIx (Xenopus (Silurana) tropicalis)

Organism:
Xenopus tropicalis
12 Series
92 Samples
Download data
Platform
Accession:
GPL13741
ID:
100013741

3.

stage 18 mRNA-seq

Organism:
Xenopus tropicalis
Source name:
Whole embryos
Platform:
GPL13741
Series:
GSE38605
Download data: BED
Sample
Accession:
GSM946004
ID:
300946004

SRA Run Selector

4.

stage 10 mRNA-seq

Organism:
Xenopus tropicalis
Source name:
Whole embryos
Platform:
GPL13741
Series:
GSE38605
Download data: BED
Sample
Accession:
GSM946003
ID:
300946003

SRA Run Selector

5.

stage 8 mRNA-seq

Organism:
Xenopus tropicalis
Source name:
Whole embryos
Platform:
GPL13741
Series:
GSE38605
Download data: BED
Sample
Accession:
GSM946002
ID:
300946002

SRA Run Selector

6.

stage 10 Vegetal Pole small RNA-seq

Organism:
Xenopus tropicalis
Source name:
Vegetal pole of embryo
Platform:
GPL13741
Series:
GSE38605
Download data: BED
Sample
Accession:
GSM946001
ID:
300946001

SRA Run Selector

7.

stage 10 Animal Pole small RNA-seq

Organism:
Xenopus tropicalis
Source name:
Animal pole of embryo
Platform:
GPL13741
Series:
GSE38605
Download data: BED
Sample
Accession:
GSM946000
ID:
300946000

SRA Run Selector

8.

stage 18 small RNA-seq

Organism:
Xenopus tropicalis
Source name:
Whole embryos
Platform:
GPL13741
Series:
GSE38605
Download data: BED
Sample
Accession:
GSM945999
ID:
300945999

SRA Run Selector

9.

stage 10 small RNA-seq

Organism:
Xenopus tropicalis
Source name:
Whole embryos
Platform:
GPL13741
Series:
GSE38605
Download data: BED
Sample
Accession:
GSM945998
ID:
300945998

SRA Run Selector

10.

stage 8 small RNA-seq

Organism:
Xenopus tropicalis
Source name:
Whole embryos
Platform:
GPL13741
Series:
GSE38605
Download data: BED
Sample
Accession:
GSM945997
ID:
300945997

SRA Run Selector

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db=gds|term=GSE38605[Accession]|query=1|qty=2|blobid=MCID_67993610f5211606902560ad|ismultiple=true|min_list=5|max_list=20|def_tree=20|def_list=|def_view=|url=/Taxonomy/backend/subset.cgi?|trace_url=/stat?
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