GSE158003[Accession] - GEO DataSets - NCBI

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Select item 2001580031.

HyPR-seq: Single-cell quantification of chosen RNAs via hybridization and sequencing of DNA probes (HyPR-seq dataset)

(Submitter supplied) Single-cell quantification of RNAs is important for understanding cellular heterogeneity and gene regulation, yet current approaches suffer from low sensitivity for individual transcripts, limiting their utility for many applications. Here we present HyPR-seq, a method to sensitively quantify the expression of 10 to 100 chosen genes in single cells. HyPR-seq involves hybridizing DNA probes to RNA, distributing cells into nanoliter droplets, amplifying the probes with PCR, and sequencing the amplicons to quantify the expression of chosen genes. more...

Organism:: Mus musculus; Homo sapiens

Type:: Expression profiling by high throughput sequencing

Platforms:: GPL21626 GPL21697
72 Samples

Download data: TXT

Series

Accession:: GSE158003

ID:: 200158003

PubMed Full text in PMC Similar studies SRA Run Selector

Select item 1000216972.

NextSeq 550 (Homo sapiens)

Organism:: Homo sapiens

1499 Series
44577 Samples

Platform

Accession:: GPL21697

ID:: 100021697

Select item 1000216263.

NextSeq 550 (Mus musculus)

Organism:: Mus musculus

1398 Series
59735 Samples

Platform

Accession:: GPL21626

ID:: 100021626

Select item 3047839874.

Organism:: Homo sapiens

Source name:: THP1 monocytic cell line

Platform:: GPL21697
Series:: GSE158003 GSE158004

Download data: TXT

Sample

Accession:: GSM4783987

ID:: 304783987

SRA Run Selector

Select item 3047839865.

Organism:: Homo sapiens

Source name:: THP1 monocytic cell line

Platform:: GPL21697
Series:: GSE158003 GSE158004

Download data: TXT

Sample

Accession:: GSM4783986

ID:: 304783986

SRA Run Selector

Select item 3047839856.

Organism:: Homo sapiens

Source name:: THP1 monocytic cell line

Platform:: GPL21697
Series:: GSE158003 GSE158004

Download data: TXT

Sample

Accession:: GSM4783985

ID:: 304783985

SRA Run Selector

Select item 3047839847.

Organism:: Homo sapiens

Source name:: THP1 monocytic cell line

Platform:: GPL21697
Series:: GSE158003 GSE158004

Download data: TXT

Sample

Accession:: GSM4783984

ID:: 304783984

SRA Run Selector

Select item 3047839838.

Organism:: Homo sapiens

Source name:: THP1 monocytic cell line

Platform:: GPL21697
Series:: GSE158003 GSE158004

Download data: TXT

Sample

Accession:: GSM4783983

ID:: 304783983

SRA Run Selector

Select item 3047839829.

Organism:: Homo sapiens

Source name:: THP1 monocytic cell line

Platform:: GPL21697
Series:: GSE158003 GSE158004

Download data: TXT

Sample

Accession:: GSM4783982

ID:: 304783982

SRA Run Selector

Select item 30478398110.

Organism:: Homo sapiens

Source name:: THP1 monocytic cell line

Platform:: GPL21697
Series:: GSE158003 GSE158004

Download data: TXT

Sample

Accession:: GSM4783981

ID:: 304783981

SRA Run Selector

Select item 30478398011.

Organism:: Homo sapiens

Source name:: THP1 monocytic cell line

Platform:: GPL21697
Series:: GSE158003 GSE158004

Download data: TXT

Sample

Accession:: GSM4783980

ID:: 304783980

SRA Run Selector

Select item 30478397912.

Organism:: Homo sapiens

Source name:: K562 immortalised myelogenous leukemia cell line

Platform:: GPL21697
Series:: GSE158003 GSE158004

Download data: TXT

Sample

Accession:: GSM4783979

ID:: 304783979

SRA Run Selector

Select item 30478397813.

K562_timecourse_20hr_3

Organism:: Homo sapiens

Source name:: K562 immortalised myelogenous leukemia cell line

Platform:: GPL21697
Series:: GSE158003 GSE158004

Download data: TXT

Sample

Accession:: GSM4783978

ID:: 304783978

SRA Run Selector

Select item 30478397714.

K562_timecourse_20hr_2

Organism:: Homo sapiens

Source name:: K562 immortalised myelogenous leukemia cell line

Platform:: GPL21697
Series:: GSE158003 GSE158004

Download data: TXT

Sample

Accession:: GSM4783977

ID:: 304783977

SRA Run Selector

Select item 30478397615.

K562_timecourse_20hr_1

Organism:: Homo sapiens

Source name:: K562 immortalised myelogenous leukemia cell line

Platform:: GPL21697
Series:: GSE158003 GSE158004

Download data: TXT

Sample

Accession:: GSM4783976

ID:: 304783976

SRA Run Selector

Select item 30478397516.

K562_timecourse_6hr_3

Organism:: Homo sapiens

Source name:: K562 immortalised myelogenous leukemia cell line

Platform:: GPL21697
Series:: GSE158003 GSE158004

Download data: TXT

Sample

Accession:: GSM4783975

ID:: 304783975

SRA Run Selector

Select item 30478397417.

K562_timecourse_6hr_2

Organism:: Homo sapiens

Source name:: K562 immortalised myelogenous leukemia cell line

Platform:: GPL21697
Series:: GSE158003 GSE158004

Download data: TXT

Sample

Accession:: GSM4783974

ID:: 304783974

SRA Run Selector

Select item 30478397318.

K562_timecourse_6hr_1

Organism:: Homo sapiens

Source name:: K562 immortalised myelogenous leukemia cell line

Platform:: GPL21697
Series:: GSE158003 GSE158004

Download data: TXT

Sample

Accession:: GSM4783973

ID:: 304783973

SRA Run Selector

Select item 30478397219.

K562_timecourse_5.5hr_3

Organism:: Homo sapiens

Source name:: K562 immortalised myelogenous leukemia cell line

Platform:: GPL21697
Series:: GSE158003 GSE158004

Download data: TXT

Sample

Accession:: GSM4783972

ID:: 304783972

SRA Run Selector

Select item 30478397120.

K562_timecourse_5.5hr_2

Organism:: Homo sapiens

Source name:: K562 immortalised myelogenous leukemia cell line

Platform:: GPL21697
Series:: GSE158003 GSE158004

Download data: TXT

Sample

Accession:: GSM4783971

ID:: 304783971

SRA Run Selector

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