GSE1405[Accession] - GEO DataSets - NCBI

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Select item 2000014051.

LPS-induced and E. coli-induced gene expression in wildtype and MyD88-/- mouse macrophages

(Submitter supplied) Comparison of gene expression in wildtype and MyD88-/- C57BL/6J mouse macrophages treated with 10 ng/mL LPS for 2 hours versus media treated control macrophages, and, wildtype and MyD88-/- C57BL/6J mouse macrophages treated with live E. coli bacteria (log phase; 1 bact per 1 macrophage) for 2 hours versus media treated control macrophages. Cells from 4 mice of each geneotype were used and each individual provided its own control. more...

Organism:: Mus musculus

Type:: Expression profiling by array

Datasets:: GDS1705 GDS1706
Platform:: GPL1226
31 Samples

Series

Accession:: GSE1405

ID:: 200001405

PubMed Similar studies Analyze with GEO2R

Select item 17062.

Full record GDS1706

MyD88-deficient macrophage response to lipopolysaccharide and E. coli (dye swap)

Analysis of MyD88 null mutant macrophages treated with LPS or live E. coli. MyD88 transduces cell signaling events downstream of Toll-like receptors, a key component of host defense. Results suggest most of the host response to endotoxin or live bacteria is actually regulated independently of MyD88.

Organism:: Mus musculus

Type:: Expression profiling by array, log2 ratio, 2 agent, 2 genotype/variation sets

Platform:: GPL1226
Series:: GSE1405
15 Samples

DataSet

Accession:: GDS1706

ID:: 1706

PubMed Similar studies GEO Profiles Analyze DataSet

Select item 17053.

Full record GDS1705

MyD88-deficient macrophage response to lipopolysaccharide and E. coli

Analysis of MyD88 null mutant macrophages treated with LPS or live E. coli. MyD88 transduces cell signaling events downstream of Toll-like receptors, a key component of host defense. Results suggest most of the host response to endotoxin or live bacteria is actually regulated independently of MyD88.

Organism:: Mus musculus

Type:: Expression profiling by array, log2 ratio, 2 agent, 2 genotype/variation sets

Platform:: GPL1226
Series:: GSE1405
16 Samples

DataSet

Accession:: GDS1705

ID:: 1705

PubMed Similar studies GEO Profiles Analyze DataSet

Select item 1000012264.

Mouse 13.4K long oligonucleotide array (Operon) 9.10.2002v2

(Submitter supplied) The Operon version 1.1 oligonucleotide probe set (70-mers) was printed in the Massachusetts General Hospital microarray core facility using an OmniGrid 100 (GeneMachines) on CodeLink activated slides (Amersham). Oligos were printed in 150 mM sodiumphosphate pH 8.5 with 0.0005% N-lauroyl sarcosine. Oligos were coupled to the activated slides by allowing the aminolinker on the oligos to react over night in a humidity chamber. more...

Organism:: Mus musculus

2 DataSets
1 Series
31 Samples

Platform

Accession:: GPL1226

ID:: 100001226

Select item 3000226485.

MyD88-/- macrophages, E. coli vs. Mock, mouse 4

Organism:: Mus musculus

Source name:: Macrophages from MyD88-/- mouse 4 treated with live E. coli (1 bact. per mac.) for 2 hours (channel 1) Macrophages from MyD88-/- mouse 4 treated with media only for 2 hours (channel 2)

Platform:: GPL1226
Series:: GSE1405
Dataset:: GDS1705

Sample

Accession:: GSM22648

ID:: 300022648

Select item 3000226476.

MyD88-/- macrophages, E. coli vs. Mock, mouse 4, dye swap

Organism:: Mus musculus

Source name:: Macrophages from MyD88-/- mouse 4 treated with media only for 2 hours (channel 1) Macrophages from MyD88-/- mouse 4 treated with live E. coli (1 bact. per mac.) for 2 hours (channel 2)

Platform:: GPL1226
Series:: GSE1405
Dataset:: GDS1706

Sample

Accession:: GSM22647

ID:: 300022647

Select item 3000226467.

MyD88-/- macrophages, E. coli vs. Mock, mouse 3

Organism:: Mus musculus

Source name:: Macrophages from MyD88-/- mouse 3 treated with live E. coli (1 bact. per mac.) for 2 hours (channel 1) Macrophages from MyD88-/- mouse 3 treated with media only for 2 hours (channel 2)

Platform:: GPL1226
Series:: GSE1405
Dataset:: GDS1705

Sample

Accession:: GSM22646

ID:: 300022646

Select item 3000226458.

MyD88-/- macrophages, E. coli vs. Mock, mouse 3, dye swap

Organism:: Mus musculus

Source name:: Macrophages from MyD88-/- mouse 3 treated with media only for 2 hours (channel 1) Macrophages from MyD88-/- mouse 3 treated with live E. coli (1 bact. per mac.) for 2 hours (channel 2)

Platform:: GPL1226
Series:: GSE1405
Dataset:: GDS1706

Sample

Accession:: GSM22645

ID:: 300022645

Select item 3000226449.

MyD88-/- macrophages, E. coli vs. Mock, mouse 2

Organism:: Mus musculus

Source name:: Macrophages from MyD88-/- mouse 2 treated with live E. coli (1 bact. per mac.) for 2 hours (channel 1) Macrophages from MyD88-/- mouse 2 treated with media only for 2 hours (channel 2)

Platform:: GPL1226
Series:: GSE1405
Dataset:: GDS1705

Sample

Accession:: GSM22644

ID:: 300022644

Select item 30002264310.

MyD88-/- macrophages, E. coli vs. Mock, mouse 2, dye swap

Organism:: Mus musculus

Source name:: Macrophages from MyD88-/- mouse 2 treated with media only for 2 hours (channel 1) Macrophages from MyD88-/- mouse 2 treated with live E. coli (1 bact. per mac.) for 2 hours (channel 2)

Platform:: GPL1226
Series:: GSE1405
Dataset:: GDS1706

Sample

Accession:: GSM22643

ID:: 300022643

Select item 30002264211.

MyD88-/- macrophages, E. coli vs. Mock, mouse 1

Organism:: Mus musculus

Source name:: Macrophages from MyD88-/- mouse 1 treated with live E. coli (1 bact. per mac.) for 2 hours (channel 1) Macrophages from MyD88-/- mouse 1 treated with media only for 2 hours (channel 2)

Platform:: GPL1226
Series:: GSE1405
Dataset:: GDS1705

Sample

Accession:: GSM22642

ID:: 300022642

Select item 30002264112.

MyD88-/- macrophages, E. coli vs. Mock, mouse 1, dye swap

Organism:: Mus musculus

Source name:: Macrophages from MyD88-/- mouse 1 treated with media only for 2 hours (channel 1) Macrophages from MyD88-/- mouse 1 treated with live E. coli (1 bact. per mac.) for 2 hours (channel 2)

Platform:: GPL1226
Series:: GSE1405
Dataset:: GDS1706

Sample

Accession:: GSM22641

ID:: 300022641

Select item 30002264013.

WT macrophages, E. coli vs. Mock, mouse 4

Organism:: Mus musculus

Source name:: Macrophages from wildtype mouse 4 treated with live E. coli (1 bact. per mac.) for 2 hours (channel 1) Macrophages from wildtype mouse 4 treated with media only for 2 hours (channel 2)

Platform:: GPL1226
Series:: GSE1405
Dataset:: GDS1705

Sample

Accession:: GSM22640

ID:: 300022640

Select item 30002263914.

WT macrophages, E. coli vs. Mock, mouse 4, dye swap

Organism:: Mus musculus

Source name:: Macrophages from wildtype mouse 4 treated with media only for 2 hours (channel 1) Macrophages from wildtype mouse 4 treated with live E. coli (1 bact. per mac.) for 2 hours (channel 2)

Platform:: GPL1226
Series:: GSE1405
Dataset:: GDS1706

Sample

Accession:: GSM22639

ID:: 300022639

Select item 30002263815.

WT macrophages, E. coli vs. Mock, mouse 3

Organism:: Mus musculus

Source name:: Macrophages from wildtype mouse 3 treated with live E. coli (1 bact. per mac.) for 2 hours (channel 1) Macrophages from wildtype mouse 3 treated with media only for 2 hours (channel 2)

Platform:: GPL1226
Series:: GSE1405
Dataset:: GDS1705

Sample

Accession:: GSM22638

ID:: 300022638

Select item 30002263716.

WT macrophages, E. coli vs. Mock, mouse 3, dye swap

Organism:: Mus musculus

Source name:: Macrophages from wildtype mouse 3 treated with media only for 2 hours (channel 1) Macrophages from wildtype mouse 3 treated with live E. coli (1 bact. per mac.) for 2 hours (channel 2)

Platform:: GPL1226
Series:: GSE1405
Dataset:: GDS1706

Sample

Accession:: GSM22637

ID:: 300022637

Select item 30002263617.

WT macrophages, E. coli vs. Mock, mouse 2

Organism:: Mus musculus

Source name:: Macrophages from wildtype mouse 2 treated with live E. coli (1 bact. per mac.) for 2 hours (channel 1) Macrophages from wildtype mouse 2 treated with media only for 2 hours (channel 2)

Platform:: GPL1226
Series:: GSE1405
Dataset:: GDS1705

Sample

Accession:: GSM22636

ID:: 300022636

Select item 30002263518.

WT macrophages, E. coli vs. Mock, mouse 2, dye swap

Organism:: Mus musculus

Source name:: Macrophages from wildtype mouse 2 treated with media only for 2 hours (channel 1) Macrophages from wildtype mouse 2 treated with live E. coli (1 bact. per mac.) for 2 hours (channel 2)

Platform:: GPL1226
Series:: GSE1405
Dataset:: GDS1706

Sample

Accession:: GSM22635

ID:: 300022635

Select item 30002263419.

WT macrophages, E. coli vs. Mock, mouse 1

Organism:: Mus musculus

Source name:: Macrophages from wildtype mouse 1 treated with live E. coli (1 bact. per mac.) for 2 hours (channel 1) Macrophages from wildtype mouse 1 treated with media only for 2 hours (channel 2)

Platform:: GPL1226
Series:: GSE1405
Dataset:: GDS1705

Sample

Accession:: GSM22634

ID:: 300022634

Select item 30002263320.

WT macrophages, E. coli vs. Mock, mouse 1. dye swap

Organism:: Mus musculus

Source name:: Macrophages from wildtype mouse 1 treated with media only for 2 hours (channel 1) Macrophages from wildtype mouse 1 treated with live E. coli (1 bact. per mac.) for 2 hours (channel 2)

Platform:: GPL1226
Series:: GSE1405
Dataset:: GDS1706

Sample

Accession:: GSM22633

ID:: 300022633

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