GPL4305[RGSE] - GEO DataSets

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Items: 2

Select item 2000087191.

Mapping drought-responsive genes in cotton

(Submitter supplied) Structural and functional approaches were used to study cotton (Gossypium) genes implicated in water-deficit stress. A genetic map representing the hypothetical ancestral diploid genome (Consensus Map) was used to map 1,907 of 15,784 tentative consensus sequences (TCs). These TCs represent 25,119 cotton ESTs derived from various tissues under irrigated and water-limited condition. The correspondence of mapped TCs and 42 stress-related quantitative trait loci (QTLs) revealed that 391 of the initial 1907 TCs co-localized within a QTL interval. more...

Organism:: Gossypium hirsutum; Gossypium arboreum; Gossypium raimondii

Type:: Expression profiling by array

Platform:: GPL4305
10 Samples

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Accession:: GSE8719

ID:: 200008719

Analyze with GEO2R

Select item 2000058752.

Cotton spotted oligonucleotide microarrays for gene expression analysis

(Submitter supplied) Microarrays offer a powerful tool for diverse applications plant biology and crop improvement. Recently, a global assembly of cotton ESTs was constructed based on three Gossypium. Using that assembly as a template, we now describe the design and creation and of a publicly available oligonucleotide array for cotton, useful for all four of the cultivated species. Synthetic oligonucleotide probes were generated from exemplar sequences of a global assembly of more than 150,000 cotton ESTs derived from 30 different cDNA libraries representing many different tissue types and tissue treatments. more...