GPL3503[RGSE] - GEO DataSets - NCBI

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Select item 2000325621.

Trimethoprim response in Escherichia coli in bacteriostatic and bactericidal conditions

(Submitter supplied) Transcriptional profiling of E. coli MG1655 to Trimethoprim in i) LB media, ii) M9 minimal media and iii) M9 minimal media with supplements to study the association of gene expression with corresponding lethal and non-lethal growth conditions. Supplementation conditions in M9 media included addition of 50 microgram/ml of adenine, methionine, glycine or thymine in various combinations.

Organism:: Escherichia coli

Type:: Expression profiling by array

Platform:: GPL3503
26 Samples

Download data: GPR

Series

Accession:: GSE32562

ID:: 200032562

PubMed Full text in PMC Similar studies Analyze with GEO2R

Select item 2000198792.

Thymine starvation and limitation in Escherichia coli thyA- cells

(Submitter supplied) Transcriptional profiling of responses of E. coli thymine auxotrophs to i) growth under sub-optimal thymine concentration (TLM) and ii) lethal conditions under complete thymine starvation (TLD).

Organism:: Escherichia coli

Type:: Expression profiling by array

Platform:: GPL3503
15 Samples

Download data: GPR

Series

Accession:: GSE19879

ID:: 200019879

PubMed Similar studies Analyze with GEO2R

Select item 2000154093.

Amino acid/Nucleotide perturbation in Escherichia coli

(Submitter supplied) Wild-type E. coli are prototrophic for all amino acid and nucleotides. These are synthesized by a network of interconnected metabolic pathways from a handful precursors molecules, which are regulated at the level of gene expression. It was hypothesized in this study, that since metabolic pathways are interconnected, transcriptional regulation should be shared across multiple pathways. To uncover these regulatory interactions, cells growing at steady state were perturbed by the addition of an end-metabolite (aa or nt), and were allowed to recover. more...

Organism:: Escherichia coli str. K-12 substr. MG1655; Escherichia coli

Type:: Expression profiling by array

Platform:: GPL3503
22 Samples

Download data: GPR

Series

Accession:: GSE15409

ID:: 200015409

PubMed Full text in PMC Similar studies Analyze with GEO2R

Select item 2000044174.

Temperature upshift in E coli gyrBT strain, time series

(Submitter supplied) Responses of Escherichia coli W3110gyrb234 as they are upshifted to 42C Keywords: time course

Organism:: Escherichia coli

Type:: Expression profiling by array

Platform:: GPL3503
4 Samples

Series

Accession:: GSE4417

ID:: 200004417

PubMed Full text in PMC Similar studies Analyze with GEO2R

Select item 2000043805.

Stationary phase in LB, genomic DNA reference

(Submitter supplied) Responses of Escherichia coli MG1655 in stationary phase in LB Keywords: time course

Organism:: Escherichia coli

Type:: Expression profiling by array

Dataset:: GDS2600
Platform:: GPL3503
6 Samples

Series

Accession:: GSE4380

ID:: 200004380

PubMed Full text in PMC Similar studies Analyze with GEO2R

Select item 2000043796.

Ecoli DH5alpha, pUC overexpression in LB + Amp vs no pUC

(Submitter supplied) Responses of Escherichia coli DH5alpha as they overexpress pUC at different ODs in LB + Amp Keywords: time course

Organism:: Escherichia coli

Type:: Expression profiling by array

Platform:: GPL3503
3 Samples

Series

Accession:: GSE4379

ID:: 200004379

PubMed Full text in PMC Similar studies Analyze with GEO2R

Select item 2000043787.

Novobiocin treatment in LB

(Submitter supplied) Responses of Escherichia coli at 5 mins as they are treated to different concentrations of Novobiocin in LB Keywords: dosage course

Organism:: Escherichia coli

Type:: Expression profiling by array

Dataset:: GDS2599
Platform:: GPL3503
4 Samples

Series

Accession:: GSE4378

ID:: 200004378

PubMed Full text in PMC Similar studies Analyze with GEO2R

Select item 2000043778.

Gamma treatment in Davis, timecourse

(Submitter supplied) Responses of Escherichia coli as they are treated to Gamma radiation in Davis medium Keywords: time course

Organism:: Escherichia coli

Type:: Expression profiling by array

Dataset:: GDS2598
Platform:: GPL3503
5 Samples

Series

Accession:: GSE4377

ID:: 200004377

PubMed Full text in PMC Similar studies Analyze with GEO2R

Select item 2000043769.

Anaerobic growth in M9 + glucose + fumarate

(Submitter supplied) Responses of Escherichia coli MG1655 as they grow anaerobically in M9 + glucose + fumarate (as electron acceptor) vs Aerobic growth OD 0.4 Keywords: time course

Organism:: Escherichia coli

Type:: Expression profiling by array

Dataset:: GDS2591
Platform:: GPL3503
6 Samples

Series

Accession:: GSE4376

ID:: 200004376

PubMed Full text in PMC Similar studies Analyze with GEO2R

Select item 20000437510.

Anaerobic growth in M9 + glucose

(Submitter supplied) Responses of Escherichia coli MG1655 as they grow anaerobically in M9 + glucose vs Aerobic growth OD 0.4 Keywords: time course

Organism:: Escherichia coli

Type:: Expression profiling by array

Dataset:: GDS2590
Platform:: GPL3503
6 Samples

Series

Accession:: GSE4375

ID:: 200004375

PubMed Full text in PMC Similar studies Analyze with GEO2R

Select item 20000437411.

Anaerobic growth in M9 + glucose + fumarate,genomic DNA reference

(Submitter supplied) Responses of Escherichia coli MG1655 as they grow anaerobically in M9 + glucose + fumarate Keywords: time course

Organism:: Escherichia coli

Type:: Expression profiling by array

Dataset:: GDS2589
Platform:: GPL3503
6 Samples

Series

Accession:: GSE4374

ID:: 200004374

PubMed Full text in PMC Similar studies Analyze with GEO2R

Select item 20000437312.

Anaerobic growth in M9 + glucose, genomic DNA reference

(Submitter supplied) Responses of Escherichia coli MG1655 as they grow anaerobically in M9 + glucose Keywords: time course

Organism:: Escherichia coli

Type:: Expression profiling by array

Dataset:: GDS2588
Platform:: GPL3503
6 Samples

Series

Accession:: GSE4373

ID:: 200004373

PubMed Full text in PMC Similar studies Analyze with GEO2R

Select item 20000437213.

Ecoli W3110_0.01 M sodium azide treatment vs untreated, timecourse

(Submitter supplied) Responses of Escherichia coli W3110 after treatment with 0.01 M Sodium Azide in Bonner-Vogel medium + 50 ug/ml Tryptophan Keywords: time course

Organism:: Escherichia coli

Type:: Expression profiling by array

Dataset:: GDS2597
Platform:: GPL3503
4 Samples

Series

Accession:: GSE4372

ID:: 200004372

PubMed Full text in PMC Similar studies Analyze with GEO2R

Select item 20000437114.

Recovery from stationary phase in 10 mM Na-P (pH 7.5) + 0.2 % glucose

(Submitter supplied) Responses of Escherichia coli as they recover from one stationary phase in 10 mM Na-P + 0.2 % glucose at OD 0.4 Keywords: time course

Organism:: Escherichia coli

Type:: Expression profiling by array

Dataset:: GDS2587
Platform:: GPL3503
7 Samples

Series

Accession:: GSE4371

ID:: 200004371

PubMed Full text in PMC Similar studies Analyze with GEO2R

Select item 20000437015.

Recovery from stationary phase in 10 mM Na-P (pH 7.5)

(Submitter supplied) Responses of Escherichia coli as they recover from one stationary phase in 10 mM Na-P Keywords: time course

Organism:: Escherichia coli

Type:: Expression profiling by array

Dataset:: GDS2586
Platform:: GPL3503
7 Samples

Series

Accession:: GSE4370

ID:: 200004370

PubMed Full text in PMC Similar studies Analyze with GEO2R

Select item 20000436916.

Ecoli C600 (gyrArparCr) Norfloxacin treatment (50 ug/ml) in LB, timecourse

(Submitter supplied) Responses of Ecoli (gyrArparCr) as they are treated to 50 ug/ml Norfloxacin in LB Keywords: time course

Organism:: Escherichia coli

Type:: Expression profiling by array

Dataset:: GDS2596
Platform:: GPL3503
5 Samples

Series

Accession:: GSE4369

ID:: 200004369

PubMed Full text in PMC Similar studies Analyze with GEO2R

Select item 20000436817.

Ecoli C600 (gyrArparCr) Norfloxacin treatment (15 ug/ml) in LB, timecourse

(Submitter supplied) Responses of Ecoli (gyrArparCr) as they are treated to 15 ug/ml Norfloxacin in LB Keywords: time course

Organism:: Escherichia coli

Type:: Expression profiling by array

Dataset:: GDS2595
Platform:: GPL3503
5 Samples

Series

Accession:: GSE4368

ID:: 200004368

PubMed Full text in PMC Similar studies Analyze with GEO2R

Select item 20000436718.

Ecoli C600 Norfloxacin treatment (50 ug/ml) in LB, timecourse

(Submitter supplied) Responses of Ecoli as they are treated to 50 ug/ml Norfloxacin in LB Keywords: time course

Organism:: Escherichia coli

Type:: Expression profiling by array

Dataset:: GDS2594
Platform:: GPL3503
5 Samples

Series

Accession:: GSE4367

ID:: 200004367

PubMed Full text in PMC Similar studies Analyze with GEO2R

Select item 20000436619.

Balanced growth of Ecoli MG1655/pTrc99a(NOX-) at different growth rates

(Submitter supplied) Responses of Escherichia coli MG1655/pTrc99a(NOX-) grown at different growth rates in chemostat in M9 + salts Keywords: different growth rates in parallel

Organism:: Escherichia coli

Type:: Expression profiling by array

Dataset:: GDS2593
Platform:: GPL3503
5 Samples

Series

Accession:: GSE4366

ID:: 200004366

PubMed Full text in PMC Similar studies Analyze with GEO2R

Select item 20000436520.

Balanced growth of Ecoli MG1655/pTrc99a(NOX+) at different growth rates

(Submitter supplied) Responses of Escherichia coli MG1655/pTrc99a(NOX+) grown at different growth rates in chemostat in M9 + salts NOX: NADH oxygenase converts NADH to NAD. Cells with NOX are able to recycle the excess NADH generated during rapid growth, leading to lesser accumulation of acetate Keywords: different growth rates in parallel

Organism:: Escherichia coli

Type:: Expression profiling by array

Dataset:: GDS2592
Platform:: GPL3503
5 Samples

Series

Accession:: GSE4365

ID:: 200004365

PubMed Full text in PMC Similar studies Analyze with GEO2R

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