GEO DataSets

(Submitter supplied) transcriptome approach was performed at three stages of seed development during seed filling, seed maturation and seed maturity to compare between seed transcriptomes from Xcf-inoculated and water-inoculated seeds.

Organism:

Phaseolus vulgaris

Type:

Expression profiling by high throughput sequencing

Platform:

GPL24868

18 Samples

Download data: CSV

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.

Organism:

Phaseolus vulgaris; Xanthomonas citri pv. fuscans

Type:

Expression profiling by high throughput sequencing; Methylation profiling by high throughput sequencing; Non-coding RNA profiling by high throughput sequencing

4 related Platforms

53 Samples

Download data: BW, SF, TXT

(Submitter supplied) Purpose: To identify nucleosome-depleted regions in response to drought in the kidney bean, a genome-wide chromatin profiling strategy was implemented. A better understanding of these OCRs (Open chromatin regions) will be useful in exploring potential genomic regions for crop improvement. Results: Using a comprehensive FAIRE-Seq approach, nucleosome-free chromatin regions were explored in kidney bean (Phaseolus vulgaris. more...

Organism:

Phaseolus vulgaris

Type:

Genome binding/occupancy profiling by high throughput sequencing

Platform:

GPL24868

16 Samples

Download data: TDF

(Submitter supplied) We report an small RNA sequencing (sRNA-seq) approach to identify host sRNAs involved in the nitrogen fixing symbiosis between Mesoamerican Phaseolus vulgaris and Rhizobium etli strains with different degrees in nodulation efficiency. This approach identified conserved and known microRNAs (miRNAs) differentially accumulated in Mesoamerican P. vulgaris roots in response to a highly efficient strain, to a less efficient one or to both strains.

Organism:

Phaseolus vulgaris

Type:

Non-coding RNA profiling by high throughput sequencing

Platform:

GPL24868

6 Samples

Download data: TXT

(Submitter supplied) Quantitative disease resistance (QDR) is a form of plant immunity conserved across species able to limit infections caused by a broad range of pathogens. QDR has a complex genetic determinism, the bases of which are not fully understood. The number of genes contributing to the QDR response and the extent to which molecular components of the QDR response vary across plant species remain elusive. The fungal pathogen Sclerotinia sclerotiorum, causal agent of white mold disease on hundreds of plant species, triggers QDR responses in host populations. more...

Organism:

Helianthus annuus; Beta vulgaris subsp. vulgaris; Phaseolus vulgaris; Ricinus communis

Type:

Expression profiling by high throughput sequencing

4 related Platforms

24 Samples

Download data: TXT

(Submitter supplied) Comparative RNA-Seq study of expression in Phaseolus vulgaris nectaries

Organism:

Phaseolus vulgaris

Type:

Expression profiling by high throughput sequencing

Platform:

GPL24868

21 Samples

Download data: XLS