GPL22077[Accession] - GEO DataSets

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Select item 2002522771.

Effect of organic fertilizer substitution on nitrogen metabolism of highland barley

(Submitter supplied) To investigate the effects of organic fertilizer replacing chemical fertilizer on the growth and development of barley (Kunlun-14), a pot experiment was conducted. The study examined the impacts of different ratios of organic fertilizer replacing chemical fertilizer nitrogen (0%, 40%, 100%, denoted as OFR0, OFR40, OFR100, respectively) on the growth characteristics, leaf carbon-nitrogen balance, and nitrogen metabolism enzyme activities of barley.

Organism:: Hordeum vulgare

Type:: Expression profiling by high throughput sequencing

Platform:: GPL22077
18 Samples

Download data: TXT

Series

Accession:: GSE252277

ID:: 200252277

Select item 2002235212.

Differential transcription network analysis for Fusarium head blight disease of barley in combination with drought stress

(Submitter supplied) For improvement of stress and disease resistance of barley, this global transcriptomic study focuses on how drought conditions affect Fusarium head blight (FHB) severity in spring barley. In general, drought-stress prior to Fusarium culmorum infection reduced FHB-susceptibility. This study gives evidence, that FHB-severity and strength of drought responses is variety-dependent under complex stress situations.

Organism:: Hordeum vulgare

Type:: Expression profiling by high throughput sequencing

Platform:: GPL22077
144 Samples

Download data: CSV

Series

Accession:: GSE223521

ID:: 200223521

PubMed Similar studies

Select item 2002284103.

MADS1-regulated lemma and awn development benefits barley yield

(Submitter supplied) Floral organ shape and size in cereal crops can affect grain size and yield, so genes that regulate their development are promising breeding targets. The lemma, which protects inner floral organs, can physically constrain grain growth; while the awn, a needle-like extension of the lemma, creates photosynthates to promote grain fill. Although several genes and modules controlling grain size and awn/lemma growth in rice have been characterized, these processes, and the relationships between them, are not well understood for barley and wheat. more...

Organism:: Hordeum vulgare

Type:: Expression profiling by high throughput sequencing

Platform:: GPL22077
6 Samples

Download data: TXT

Series

Accession:: GSE228410

ID:: 200228410

Select item 2002356224.

Characterization of a barley (Hordeum vulgare L.) mutant with Multiple Stem Nodes and Spikes and Dwarf (msnsd) and fine-mapping of its causal gene

(Submitter supplied) Abstract: Multiple nodes and dwarf mutants in barley are a valuable resource for identifying genes that control shoot branching, vegetative growth, and development. In this study, physiological, microscopic and genetic analylsis were conducted to characterize and fine-map the underling gene of A a barley mutant with Multiple Stem Nodes and Spikes and Dwarf (msnsd) , which was selected from EMS- and 60Co-treated barley cv. more...

Organism:: Hordeum vulgare

Type:: Expression profiling by high throughput sequencing

Platform:: GPL22077
6 Samples

Download data: TXT

Series

Accession:: GSE235622

ID:: 200235622

PubMed Full text in PMC Similar studies

Select item 2002333165.

Barley seed developmental series

(Submitter supplied) To provide comprehensive spatiotemporal information about biological processes in developing grains of cultivated barley (Hordeum vulgare subsp. vulgare), we performed a transcriptomic study of the embryo, endosperm, and seed maternal tissues collected from 4 to 32 days after pollination.

Organism:: Hordeum vulgare

Type:: Expression profiling by high throughput sequencing

Platform:: GPL22077
39 Samples

Download data: TXT, XLSX

Series

Accession:: GSE233316

ID:: 200233316

PubMed Similar studies

Select item 2001454276.

Barley shoot and root growing in low-Pi condition

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.

Organism:: Hordeum vulgare

Type:: Expression profiling by high throughput sequencing; Non-coding RNA profiling by high throughput sequencing

Platforms:: GPL28029 GPL22077
20 Samples

Download data

Series

Accession:: GSE145427

ID:: 200145427

PubMed Full text in PMC Similar studies

Select item 2001454237.

Deep-sequencing of degraded or cleaved RNAs from barley shoot and root growing in low-Pi condition.

(Submitter supplied) RNA was isolated from 23 old barley plants (shoots and roots), line Rolap. PARE libraries were constructed for both barley organs, followed by sequencing of NGS libraries.

Organism:: Hordeum vulgare

Type:: Non-coding RNA profiling by high throughput sequencing

Platform:: GPL22077
2 Samples

Download data: FASTA, XLSX

Series

Accession:: GSE145423

ID:: 200145423

PubMed Full text in PMC Similar studies SRA Run Selector

Select item 2001625418.

Identification of microRNAs in response to low potassium stress in the shoots of Tibetan wild barley and cultivated barley

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.

Organism:: Hordeum vulgare

Type:: Non-coding RNA profiling by high throughput sequencing; Other

Platform:: GPL22077
26 Samples

Download data

Series

Accession:: GSE162541

ID:: 200162541

Select item 2001625409.

Identification of microRNAs in response to low potassium stress in the shoots of Tibetan wild barley and cultivated barley [degradome]

(Submitter supplied) Soil potassium deficiency has become a global problem in agricultural production, seriously restricting crops productions and agricultural sustainable development. Identification of the microRNAs and understanding their functions in response to low K stress will be helpful for developing crop varieties with low K tolerance. Our previous study identified a low K tolerant accession XZ153 from Tibetan wild barley. more...

Organism:: Hordeum vulgare

Type:: Other

Platform:: GPL22077
2 Samples

Download data: XLSX

Series

Accession:: GSE162540

ID:: 200162540

SRA Run Selector

Select item 20016253910.

Identification of microRNAs in response to low potassium stress in the shoots of Tibetan wild barley and cultivated barley [miRNA-seq]

Organism:: Hordeum vulgare

Type:: Non-coding RNA profiling by high throughput sequencing

Platform:: GPL22077
24 Samples

Download data: XLSX

Series

Accession:: GSE162539

ID:: 200162539

SRA Run Selector

Select item 20014911011.

RNA sequencing of the Hordeum vulgare near-isogenic line mnd1.a

(Submitter supplied) RNA sequencing of the near-isogenic line mnd1.a in cv. Bowman background, compared to cv. Mesa and cv. Bowman Purpose: Expression analysis and variant calling.

Organism:: Hordeum vulgare

Type:: Expression profiling by high throughput sequencing

Platform:: GPL22077
22 Samples

Download data: VCF, XLSX

Series

Accession:: GSE149110

ID:: 200149110

PubMed Full text in PMC Similar studies SRA Run Selector

Select item 20014419912.

Mildew locus O facilitates colonization by arbuscular mycorrhiza in angiosperms

(Submitter supplied) RNA-sequencing of Hordeum vulgare cv. Ingrid wild type and Hvmlo1-5 mutant in non-mycorrhizal (control) and mycorrhizal roots at 17 days post inoculation (dpi) and 26 dpi.

Organism:: Hordeum vulgare

Type:: Expression profiling by high throughput sequencing

Platform:: GPL22077
24 Samples

Download data: TSV

Series

Accession:: GSE144199

ID:: 200144199

PubMed Full text in PMC Similar studies SRA Run Selector

Select item 20013051713.

RNA-Seq data used to explore transcriptional dynamics in multipartite fungus-plant interactions: Hordeum vulgare, Serendipita vermifera, Bipolaris sorokiniana

(Submitter supplied) We addressed the question how the interaction between the beneficial root endophyte Serendipita vermifera (Sv) and the pathogen Bipolaris sorokiniana (Bs) affects fungal behavior and determines barley host responses using a gnotobiotic natural soil-based split-root system for phenotypic and transcriptional analyses.

Organism:: Hordeum vulgare; Bipolaris sorokiniana; Serendipita vermifera

Type:: Expression profiling by high throughput sequencing

7 related Platforms
33 Samples

Download data: TXT

Series

Accession:: GSE130517

ID:: 200130517

Select item 20013218314.

Transcriptomic and alternative splicing analyses reveal mechanisms of the difference in salt tolerance between barley and rice

(Submitter supplied) Both barley (Hordeum vulgare) and rice (Oryza sativa) belong to Poaceae family, but differ greatly in salt tolerance. In order to understand molecular mechanisms in the difference of salt tolerance between the two species, the responses of transcriptomic profiles to salt stress were compared between rice (cultivar Nipponbare) and barley (accession XZ26) to reveal how alternative splicing (AS) coordinates with transcriptional regulation in adaptation to salt stress. more...

Organism:: Oryza sativa; Hordeum vulgare

Type:: Expression profiling by high throughput sequencing

Platforms:: GPL22077 GPL19290
24 Samples

Download data: TXT

Series

Accession:: GSE132183

ID:: 200132183

SRA Run Selector

Select item 20011915415.

MODIFICATION OF BARLEY PLANT PRODUCTIVITY THROUGH REGULATION OF CYTOKININ CONTENT BY REVERSE-GENETICS APPROACHES

(Submitter supplied) Barley is one of the most important cereals, which is used for breweries, animal and human feeds. Genetic manipulation of plant hormone cytokinin (CK) levels may influence several physiological processes, besides others stress tolerance, root formation and crop yield. In planta, endogenous CK status is finely regulated by the enzyme cytokinin dehydrogenase (EC 1.5.99.12; CKX), that irreversibly cleaves the N6-side chain of adenine-derived CKs. more...

Organism:: Hordeum vulgare

Type:: Expression profiling by high throughput sequencing

Platform:: GPL22077
18 Samples

Download data: CSV

Series

Accession:: GSE119154

ID:: 200119154

SRA Run Selector

Select item 20010219116.

RNA sequencing of Hordeum vulgare near-isogenic lines

(Submitter supplied) RNA sequencing of ILs of vrs1, vrs3, vrs4 and int-c.5 in cv. Bowman Purpose: Expression analysis and variant calling

Organism:: Hordeum vulgare

Type:: Expression profiling by high throughput sequencing

Platform:: GPL22077
32 Samples

Download data: VCF, XLSX

Series

Accession:: GSE102191

ID:: 200102191

PubMed Full text in PMC Similar studies SRA Run Selector

Select item 20008367617.

Barley transcriptional responses to specialist and generalist spider mite herbivores

(Submitter supplied) Spider mites, including the two-spotted spider mite (Tetranychus urticae, TSSM) and the Banks grass mite (Oligonychus pratensis, BGM), are becoming increasingly important agricultural pests. The TSSM is an extreme generalist documented to feed on more than 1100 plant hosts. In contrast, the BGM is a grass specialist, with hosts including important cereal crops like maize, wheat, sorghum and barley. Historically, studies of plant-herbivore interactions have focused largely on insects. However, far less is known about plant responses to spider mite herbivores, especially in grasses, and whether responses differ between generalists and specialists. To identify plant defense pathways responding to spider mites, we collected time course RNA-seq data from barley (Hordeum vulgare L.) infested with TSSMs and BGMs. Additionally, and as a comparison to the physical damage caused by spider mite feeding, a wounding treatment was also included.