GPL19910[Accession] - GEO DataSets

Search results

Items: 1 to 20 of 103

<< First< Prev

Page of 6

Select item 2002619341.

Antibiotic Exposure Reprograms Metabolism to Mobilize Bacillus subtilis in competitive interactions

(Submitter supplied) Antibiotics have dose-dependent effects on exposed bacteria. The medicinal use of antibiotics relies on their growth-inhibitory activities at sufficient concentrations. At subinhibitory concentrations, exposure effects vary widely among different antibiotics and bacteria. Bacillus subtilis responds to bacteriostatic translation inhibitors by mobilizing a population of cells (MOB-Mobilized Bacillus) to spread across a surface. more...

Organism:: Bacillus subtilis

Type:: Expression profiling by high throughput sequencing

Platform:: GPL19910
20 Samples

Download data: CSV

Series

Accession:: GSE261934

ID:: 200261934

PubMed Full text in PMC Similar studies

Select item 2002294152.

Identification of RoxS targets

(Submitter supplied) To identify RoxS targets and do the comparison with RoxS targets identified by pulsed SILAC experiment

Organism:: Bacillus subtilis

Type:: Expression profiling by high throughput sequencing

Platform:: GPL19910
6 Samples

Download data: TXT

Series

Accession:: GSE229415

ID:: 200229415

PubMed Full text in PMC Similar studies

Select item 2001928683.

Chromosome remodelling by SMC/Condensin in B. subtilis is regulated by Soj/ParA during growth and sporulation

(Submitter supplied) SMC complexes, loaded at ParB-parS sites, are key mediators of chromosome organization in bacteria. ParA/Soj proteins interact with ParB/Spo0J in a pathway involving ATP-dependent dimerization and DNA binding, leading to chromosome segregation and SMC loading. In Bacillus subtilis, ParA/Soj also regulates DNA replication initiation, and along with ParB/Spo0J is involved in cell cycle changes during endospore formation. more...

Organism:: Bacillus subtilis

Type:: Genome binding/occupancy profiling by high throughput sequencing

Platforms:: GPL19910 GPL29515
21 Samples

Download data: TXT

Series

Accession:: GSE192868

ID:: 200192868

Select item 2001635734.

A low Smc flux avoids collisions and facilitates chromosome organization in B. subtilis

(Submitter supplied) SMC complexes are widely conserved ATP-powered loop extrusion motors indispensable for the faithful segregation of chromosomes during cell division. How SMC complexes translocate along DNA for loop extrusion and what happens when two complexes meet on the same DNA molecule is largely unknown. Revealing the origins and the consequences of SMC encounters is crucial for understanding the folding process not only of bacterial, but also of eukaryotic chromosomes. more...

Organism:: Bacillus subtilis

Type:: Genome binding/occupancy profiling by high throughput sequencing; Other

Platforms:: GPL29515 GPL24109 GPL19910
109 Samples

Download data: TXT

Series

Accession:: GSE163573

ID:: 200163573

PubMed Full text in PMC Similar studies SRA Run Selector

Select item 2001695655.

RNA-seq,Tn-seq, and whole genome sequencing of hydroxyurea treated Bacillus subtilis cells

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.

Organism:: Bacillus subtilis

Type:: Expression profiling by high throughput sequencing; Other

Platforms:: GPL19910 GPL21373 GPL29515
42 Samples

Download data

Series

Accession:: GSE169565

ID:: 200169565

PubMed Full text in PMC Similar studies

Select item 2001695646.

Tn-seq of hydroxyurea treated Bacillus subtilis cells

(Submitter supplied) Hydroxyurea (HU) is thought to primarily target ribonucleotide reductase (RNR), therefore inhibiting the conversion of rNTPs into dNTPs and slowing DNA replication. To understand how Bacillus subtilis responds to HU stress, we performed RNA-seq and Tn-seq. We obtained genes with fitness defects following hydroxyurea treatment over 3 growth periods.

Organism:: Bacillus subtilis

Type:: Other

Platform:: GPL19910
22 Samples

Download data: CSV

Series

Accession:: GSE169564

ID:: 200169564

PubMed Full text in PMC Similar studies SRA Run Selector

Select item 2001095237.

Transcriptome analysis of Bacillus subtilis NBRC 16449 grown on surface of boiled soybeans under the similar condition to production of Japanese traditional soybean-fermented food "natto"

(Submitter supplied) Purpose:The goals of this study are to clarify the B. subtilis NBRC 16449 response to soybeans. Methods: B. subtilis NBRC 16449 cells were aerobically cultured in liquid LB, LB solidified with agar, or on surface of boiled soybeans to logarithmic growth phase. Total RNAs were extracted from bacterial cells by Hot-Phenol method. Samples for RNA-seq were prepared according to Illmina protocol available from the manufacture. more...

Organism:: Bacillus subtilis

Type:: Expression profiling by high throughput sequencing

Platform:: GPL19910
3 Samples

Download data: XLSX

Series

Accession:: GSE109523

ID:: 200109523

PubMed Full text in PMC Similar studies SRA Run Selector

Select item 2000670588.

NusA-dependent Transcription Termination Prevents Global Misregulation of Gene Expression

(Submitter supplied) Canonical bacterial intrinsic terminators do not require additional factors for efficient transcription termination, although the general transcription elongation factor NusA was known to increase the termination efficiency slightly in vitro. We found that the effect of NusA varies widely among different terminators and identified a subclass of weak non-canonical terminators that largely depend on NusA for recognition by RNA polymerase. more...