GEO DataSets

(Submitter supplied) We analyzed the impact of different phosphate levels on the regulation of plant and fungal transcriptomes.

Organism:

Populus trichocarpa; Rhizophagus irregularis; Sorghum bicolor

Type:

Expression profiling by high throughput sequencing

5 related Platforms

27 Samples

Download data: CSV, TXT

(Submitter supplied) Arbuscular mycorrhizal fungi arguably form the most successful and wide-spread endosymbiosis with plants. In general terms there is very little host-specificity in this interaction, indicating an extremely broad compatibility. However, host preferences as well as varying symbiotic efficiencies have been observed, the molecular basis of which is still largely unknown. Secreted proteins (SPs) may act as fungal effectors to control symbiotic efficiency in a host-dependent manner. more...

Organism:

Rhizophagus irregularis

Type:

Expression profiling by high throughput sequencing

Platforms:

GPL19734 GPL23542

18 Samples

Download data: XLSX

(Submitter supplied) Purpose: The recent publication of the fungal mutualist R. irregularis genome facilitated transcriptomic studies. We here wanted to understand the large host range of this fungus, throught its gene regulation in divergent plants Methods: mRNA from Medicago truncatula (legume), Brachypodium distachyon (grass) and Lunularia cruciata (liverwort) in association with R. irregularis were sequenced. Reads were mapped on the genome assembly with the software CLC workbench. more...

Organism:

Medicago truncatula; Rhizophagus irregularis; Brachypodium distachyon; Lunularia cruciata

Type:

Expression profiling by high throughput sequencing

4 related Platforms

12 Samples

Download data: TXT

(Submitter supplied) Purpose: The recent publication of the fungal mutualist R. irregularis genome facilitated transcriptomic studies. We here adress the gene regulation of R. irregularis in response to root exudates from rice wild-type and osnope1 (no perception candidate - mutant unable to host arbuscular mycorrhizal fungi) Methods: Spores of R. irregularis were treated with root exudates and collected at 1 hour, 24 hours and 7 days after addition. more...

Organism:

Rhizophagus irregularis

Type:

Expression profiling by high throughput sequencing

Platform:

GPL19734

21 Samples

Download data: XLS