GEO DataSets

(Submitter supplied) MPSS mouse transcriptome analysis project. See http://www.ncbi.nlm.nih.gov/geo/info/mouse-trans.html for more details. Keywords: other

Organism:

Mus musculus

Type:

Expression profiling by MPSS

Dataset:

GDS868

Platform:

GPL1010

87 Samples

Download data: TXT

(Submitter supplied) MPSS analysis of mouse BLK CL.4 cells and liver cells. Total RNA, nuclear RNA and post-nuclear RNA examined. Keywords: other

Organism:

Mus musculus

Type:

Expression profiling by MPSS

Dataset:

GDS878

Platform:

GPL1010

6 Samples

Download data: TXT

Massively parallel signature sequencing (MPSS) analysis of C57BL/6J BLK CL.4 cells and liver cells. Total mRNA, nuclear mRNA and post-nuclear mRNA examined.

Organism:

Mus musculus

Type:

Expression profiling by MPSS, count, 2 cell type, 3 protocol sets

Platform:

GPL1010

Series:

GSE1067

6 Samples

Download data: TXT

Large scale transcriptome analysis using massively parallel signature sequencing (MPSS) technology. The focus of this project is to generate a reference tissue expression dataset for C57BL/6J.

Organism:

Mus musculus

Type:

Expression profiling by MPSS, count, 4 gender, 49 tissue sets

Platform:

GPL1010

Series:

GSE1581

87 Samples

Download data: TXT

(Submitter supplied) MPSS signatures detected in Lynx mouse transcriptome analysis experiment. To generate a complete, annotated mouse signature database, we extracted all the possible signatures (“virtual signatures”) from the mouse genome sequence (NCBI build 33) and the mouse UniGene sequences (UniGene build #145). Each virtual signature is ranked based on its position and orientation in the original sequence. The annotation for that sequence is then assigned to the signature and the resulting signature database is used to annotate the data from the experiments, using our “TopHit” algorithm. more...

Organism:

Mus musculus

2 DataSets

2 Series

93 Samples

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