GEO DataSets

(Submitter supplied) The oomycete Pythium oligandrum is a potential biocontrol agent to control a wide range of fungal and oomycetes-caused diseases such as Pythium myriotylum-caused rhizome rot in ginger leading to reduced yields and compromised quality. Previously, P. oligandrum has been studied for its plant growth-promoting potential by auxin production and induction of disease resistance by elicitors such as oligandrin. more...

Organism:

Zingiber officinale

Type:

Expression profiling by high throughput sequencing

Platform:

GPL33502

6 Samples

Download data: TXT

(Submitter supplied) Comparative analysis of micro-RNA (miRNA) in ginger-derived nanoparticles and ginger donor tissue using next-generation sequencing (NGS). The ginger-derived nanoparticles were prepared by differential ultracentrifuges. We mapped about 30 to 50 million sequence reads to the plant miRNA database and identified total of 2228 miRNAs including 532 miRNAs higher in nanoparticles and 1,280 miRNAs higner in tissue.

Organism:

Zingiber officinale

Type:

Non-coding RNA profiling by high throughput sequencing

Platform:

GPL25221

3 Samples

Download data: XLSX

(Submitter supplied) In this study, we found that the highly expressed miRNAs appear in EPDELNs (Edible plant-derived exosome-like nanoparticles) have the potential to regulate human mRNA in a cross-kingdom manner. Target prediction and functional analysis revealed that highly expressed miRNAs were closely associated with inflammatory responses and cancer-related pathways. Therefore, we hypothesized that miRNAs in EPDELNs may be a crucial factor behind the regulatory function of EPDELNs.

Organism:

Glycine max; Zingiber officinale; Solanum lycopersicum; Actinidia chinensis; Cucumis melo; Pisum sativum; Vaccinium; Cocos nucifera; Citrus x paradisi; Pyrus; Citrus reticulata

Type:

Non-coding RNA profiling by high throughput sequencing

11 related Platforms

11 Samples

Download data: TXT, XLSX