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Items: 1 to 20 of 79

1.

Cappable-Seq analysis of the N. punctiforme primary transcriptome during hormogonium development in wild type, and three sigma-factor deletion strains

(Submitter supplied) Cappable-Seq (Ettwiller et. al., BMC Genomics volume 17, Article number: 199 (2016)) was employed to identify transcriptional start sites (TSSs) representing the primary transcriptome of hormogonia, motile filaments of the filamentous cyanobacterium in N. punctiforme ATCC29133. TSSs were defined using the wild-type strain and subsequently the expression of these TSSs was analyzed in each of three sigma-factor deletion mutant strains.
Organism:
Nostoc punctiforme PCC 73102
Type:
Other
Platform:
GPL30445
4 Samples
Download data: WIG, XLSX
Series
Accession:
GSE180983
ID:
200180983

SRA Run Selector

2.

Transcriptomic analysis of cyanobacterial alkane production

(Submitter supplied) To identify transcriptional adaptations associated with increased alkane production in Nostoc punctiforme, we performed comparative transcriptomic analysis of an alkane overproduction strain. RNA-seq data identified a large number of highly up-regulated genes in the overproduction strain potentially involved in rRNA processing, mycosporine-glycine production, and synthesis of non-ribosomal peptides including nostopeptolide A. more...
Organism:
Nostoc punctiforme PCC 73102
Type:
Expression profiling by high throughput sequencing
Platform:
GPL27781
6 Samples
Download data: TXT
Series
Accession:
GSE140625
ID:
200140625

SRA Run Selector

3.

RNAseq analysis of the N. punctiforme transcriptome during hormogonium development in wild type, and three sigma-factor deletion strains

(Submitter supplied) Change in gene expression for wild-type Nostoc punctiforme ATCC 29133, or three derivative strains with sigma factors deleted, over the time course of hormogonium development
Organism:
Nostoc punctiforme PCC 73102
Type:
Expression profiling by high throughput sequencing
Platform:
GPL26037
60 Samples
Download data: XLSX
Series
Accession:
GSE124969
ID:
200124969

SRA Run Selector

4.

RNAseq analysis of the N. punctiforme transcriptome during hormogonium development

(Submitter supplied) Change in gene expression for wild-type Nostoc punctiforme ATCC 29133 over the time course of hormogonium development
Organism:
Nostoc punctiforme PCC 73102
Type:
Expression profiling by high throughput sequencing
Platform:
GPL22983
5 Samples
Download data: TXT
Series
Accession:
GSE94020
ID:
200094020

SRA Run Selector

5.

sigF-deletion CapSeq 6h

Organism:
Nostoc punctiforme PCC 73102
Source name:
N. punctiforme
Platform:
GPL30445
Series:
GSE180983
Download data: WIG
Sample
Accession:
GSM5481684
ID:
305481684

SRA Run Selector

6.

sigC-deletion CapSeq 6h

Organism:
Nostoc punctiforme PCC 73102
Source name:
N. punctiforme
Platform:
GPL30445
Series:
GSE180983
Download data: WIG
Sample
Accession:
GSM5481683
ID:
305481683

SRA Run Selector

7.

sigJ-deletion CapSeq 6h

Organism:
Nostoc punctiforme PCC 73102
Source name:
N. punctiforme
Platform:
GPL30445
Series:
GSE180983
Download data: WIG
Sample
Accession:
GSM5481682
ID:
305481682

SRA Run Selector

8.

WT CapSeq 6h

Organism:
Nostoc punctiforme PCC 73102
Source name:
N. punctiforme
Platform:
GPL30445
Series:
GSE180983
Download data: WIG
Sample
Accession:
GSM5481681
ID:
305481681

SRA Run Selector

9.

Npun_F1710/11 overexpresser rep3

Organism:
Nostoc punctiforme PCC 73102
Source name:
Bacterial culture
Platform:
GPL27781
Series:
GSE140625
Download data: TXT
Sample
Accession:
GSM4175952
ID:
304175952

SRA Run Selector

10.

Npun_F1710/11 overexpresser rep2

Organism:
Nostoc punctiforme PCC 73102
Source name:
Bacterial culture
Platform:
GPL27781
Series:
GSE140625
Download data: TXT
Sample
Accession:
GSM4175951
ID:
304175951

SRA Run Selector

11.

Npun_F1710/11 overexpresser rep1

Organism:
Nostoc punctiforme PCC 73102
Source name:
Bacterial culture
Platform:
GPL27781
Series:
GSE140625
Download data: TXT
Sample
Accession:
GSM4175950
ID:
304175950

SRA Run Selector

12.

WT rep3

Organism:
Nostoc punctiforme PCC 73102
Source name:
Bacterial culture
Platform:
GPL27781
Series:
GSE140625
Download data: TXT
Sample
Accession:
GSM4175949
ID:
304175949

SRA Run Selector

13.

WT rep2

Organism:
Nostoc punctiforme PCC 73102
Source name:
Bacterial culture
Platform:
GPL27781
Series:
GSE140625
Download data: TXT
Sample
Accession:
GSM4175948
ID:
304175948

SRA Run Selector

14.

WT rep1

Organism:
Nostoc punctiforme PCC 73102
Source name:
Bacterial culture
Platform:
GPL27781
Series:
GSE140625
Download data: TXT
Sample
Accession:
GSM4175947
ID:
304175947

SRA Run Selector

15.

18 h_Rep 3_sigJ deletion

Organism:
Nostoc punctiforme PCC 73102
Source name:
N. punctiforme
Platform:
GPL26037
Series:
GSE124969
Download data
Sample
Accession:
GSM3560342
ID:
303560342

SRA Run Selector

16.

12 h_Rep 3_sigJ deletion

Organism:
Nostoc punctiforme PCC 73102
Source name:
N. punctiforme
Platform:
GPL26037
Series:
GSE124969
Download data
Sample
Accession:
GSM3560341
ID:
303560341

SRA Run Selector

17.

6 h_Rep 3_sigJ deletion

Organism:
Nostoc punctiforme PCC 73102
Source name:
N. punctiforme
Platform:
GPL26037
Series:
GSE124969
Download data
Sample
Accession:
GSM3560340
ID:
303560340

SRA Run Selector

18.

1 h_Rep 3_sigJ deletion

Organism:
Nostoc punctiforme PCC 73102
Source name:
N. punctiforme
Platform:
GPL26037
Series:
GSE124969
Download data
Sample
Accession:
GSM3560339
ID:
303560339

SRA Run Selector

19.

0 h_Rep 3_sigJ deletion

Organism:
Nostoc punctiforme PCC 73102
Source name:
N. punctiforme
Platform:
GPL26037
Series:
GSE124969
Download data
Sample
Accession:
GSM3560338
ID:
303560338

SRA Run Selector

20.

18 h_Rep 2_sigJ deletion

Organism:
Nostoc punctiforme PCC 73102
Source name:
N. punctiforme
Platform:
GPL26037
Series:
GSE124969
Download data
Sample
Accession:
GSM3560337
ID:
303560337

SRA Run Selector

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