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Genotype Selection - Genes

84249
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Association Results 1 - 3 of 3 Searched by gene IDs retrieved from gene search.
Genes 1 - 1 of 1 Searched by gene names and/or gene IDs.
SNPs 1 - 50 of 39425 Searched by gene symbols retrieved from gene search.
eQTL Data 1 - 45 of 45 Searched by gene IDs retrieved from gene search.
dbGaP Studies  Retrieving... Searched by traits retrieved from association results.
Genome View  Retrieving... 
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Select broad trait category to limit the items shown in the trait selection.
Select trait for search.  Selection of a trait will limit the trait categories shown above.
Data shown are selected columns matching search criteria, taken directly from NCBI’s GTEx database and browser.  This database aims to provide a central resource to archive and display associations between genetic variation and high-throughput molecular-level phenotypes.  This effort originated with the NIH GTEx roadmap project; however the scope of this resource will be extended to include any available genotype/molecular phenotype datasets.

Get information.Genes

#
Symbol
Description
Location
OMIM
PSD2pleckstrin and Sec7 domain containing 2 5 : 139,742,475 - 139,844,466620656
{ "section": "GENE", "summary": "1 - 1 of 1", "retstart": 0, "pageSize": 100, "count": 1, "SEQ": { "chr": [ ["5", 139742475, 139844466] ], "markers": { "5": [ ["PSD2", "NC_000005.10", 139742475, 139844466, "pleckstrin and Sec7 domain containing 2", "EFA6C", 84249] ] }, "unmapped": [ ] } }

Get information.Genome View

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Summary
SNPGeneCountLocation bps
SNP symbolGene symbol1 SNP or geneLocation symbolless than 2M bps
SNP symbolGene symbol2 - 10 SNPs or genesLocation symbolat least 2M bps
SNP symbolGene symbol11 - 20 SNPs or genes 
SNP symbolGene symbolmore than 20 SNPs or genes
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Get information.Association Results

#
  Trait  
rs #
  Context  
  Gene  
  Location  
  P-value  
  Source  
  Study  
Population
  PubMed  
1 Schizophrenia rs35123781 intergenic CXXC5, PSD2 5 : 139,685,595 4.000 x 10-6 NHGRI Arab 26198764
2 Body Mass Index rs13174863 intergenic CXXC5, PSD2 5 : 139,701,160 5.000 x 10-6 NHGRI South Asian
Oceania
Asian
African
European
African American
Hispanic
25673413
3 Warfarin rs356430 intergenic CXXC5, PSD2 5 : 139,692,703 5.873 x 10-5 dbGaP phs000708 African American
{ "section": "assoc", "summary": "1 - 3 of 3", "mesh": [ "Body Mass Index", "Schizophrenia", "Warfarin" ], "genes": [51523, 84249], "snps": [356430, 13174863, 35123781], "page": 1, "call": "BuildGaP", "pageSize": 50, "recCount": 3 }

Get information.SNPs

1 - 50 of 39425 < Previous Next >  Page  GoDownload Modify Search
#
rs#
Location
Function Class
Gene
Diversity
1 rs2126977496 5 : 139,844,914 downstream_transcript_variant, 500B_downstream_variant PSD2 Yes
2 rs2126977225 5 : 139,844,744 downstream_transcript_variant, 500B_downstream_variant PSD2 Yes
3 rs2126976579 5 : 139,844,284 3_prime_UTR_variant PSD2 Yes
4 rs2126976429 5 : 139,844,128 3_prime_UTR_variant PSD2 n/a
5 rs2126976176 5 : 139,843,897 3_prime_UTR_variant PSD2 n/a
6 rs2126976098 5 : 139,843,832 3_prime_UTR_variant PSD2 n/a
7 rs2126975958 5 : 139,843,715 3_prime_UTR_variant PSD2 n/a
8 rs2126975935 5 : 139,843,678 3_prime_UTR_variant PSD2 n/a
9 rs2126975904 5 : 139,843,651 3_prime_UTR_variant PSD2 Yes
10 rs2126975753 5 : 139,843,548 3_prime_UTR_variant PSD2 Yes
11 rs2126975673 5 : 139,843,498 3_prime_UTR_variant PSD2 n/a
12 rs2126975421 5 : 139,843,335 3_prime_UTR_variant PSD2 Yes
13 rs2126975357 5 : 139,843,290 3_prime_UTR_variant PSD2 Yes
14 rs2126975168 5 : 139,843,160 3_prime_UTR_variant PSD2 Yes
15 rs2126975140 5 : 139,843,143 3_prime_UTR_variant PSD2 Yes
16 rs2126975075 5 : 139,843,114 3_prime_UTR_variant PSD2 n/a
17 rs2126974976 5 : 139,843,032 3_prime_UTR_variant PSD2 n/a
18 rs2126974972 5 : 139,843,021 3_prime_UTR_variant PSD2 Yes
19 rs2126974924 5 : 139,842,985 3_prime_UTR_variant PSD2 n/a
20 rs2126974813 5 : 139,842,875 3_prime_UTR_variant PSD2 Yes
21 rs2126974610 5 : 139,842,726 3_prime_UTR_variant PSD2 n/a
22 rs2126974415 5 : 139,842,585 3_prime_UTR_variant PSD2 n/a
23 rs2126974375 5 : 139,842,560 3_prime_UTR_variant PSD2 n/a
24 rs2126974231 5 : 139,842,486 3_prime_UTR_variant PSD2 n/a
25 rs2126974211 5 : 139,842,483 3_prime_UTR_variant PSD2 n/a
26 rs2126974121 5 : 139,842,411 coding_sequence_variant, synonymous_variant PSD2 n/a
27 rs2126973989 5 : 139,842,334 coding_sequence_variant, missense_variant PSD2 n/a
28 rs2126973768 5 : 139,842,240 intron_variant PSD2 n/a
29 rs2126973310 5 : 139,841,774 intron_variant PSD2 Yes
30 rs2126972966 5 : 139,841,454 intron_variant PSD2 n/a
31 rs2126972948 5 : 139,841,436 intron_variant PSD2 Yes
32 rs2126972916 5 : 139,841,409 intron_variant PSD2 Yes
33 rs2126972897 5 : 139,841,396 intron_variant PSD2 n/a
34 rs2126972850 5 : 139,841,338 intron_variant PSD2 Yes
35 rs2126972831 5 : 139,841,327 intron_variant PSD2 Yes
36 rs2126972758 5 : 139,841,245 intron_variant PSD2 n/a
37 rs2126972630 5 : 139,841,124 intron_variant PSD2 n/a
38 rs2126972484 5 : 139,840,993 intron_variant PSD2 Yes
39 rs2126972419 5 : 139,840,927 intron_variant PSD2 Yes
40 rs2126972400 5 : 139,840,902 intron_variant PSD2 Yes
41 rs2126972349 5 : 139,840,845 intron_variant PSD2 Yes
42 rs2126972167 5 : 139,840,706 intron_variant PSD2 n/a
43 rs2126972165 5 : 139,840,700 intron_variant PSD2 n/a
44 rs2126972030 5 : 139,840,579 intron_variant PSD2 Yes
45 rs2126971891 5 : 139,840,490 intron_variant PSD2 n/a
46 rs2126971616 5 : 139,840,195 intron_variant PSD2 n/a
47 rs2126971578 5 : 139,840,168 coding_sequence_variant, stop_gained PSD2 n/a
48 rs2126971151 5 : 139,839,936 intron_variant PSD2 n/a
49 rs2126971148 5 : 139,839,934 intron_variant PSD2 n/a
50 rs2126970973 5 : 139,839,780 intron_variant PSD2 n/a
{ "section": "SNP", "summary": "1 - 50 of 39425", "genes": [], "retstart": 0, "pageSize": 50, "count": 39425, "SEQ": { "chr": [ ], "markers": { }, "unmapped": [ ] } }

Get information.eQTL Data

gap572635.kquees.asia80gapphegenihttps://572635.kquees.asia/gaphttps://572635.kquees.asiahttps://572635.kquees.asia/gap/phegeni/gaphttps://572635.kquees.asia/gap/phegeni/phegenitrueCE8DCC3276431671_1575SID/projects/dbGap/Epiview/EpiView@4.17offeQTLTable_LeQTLTable_Lgapgap15084249 N4IgDgTgpgbg mAFgSwCYgFwgMIFEAcAIttgMwBMA7AGykBiAnAAy4CMTHnn1VTArE3wA6ALZxqIAL5A
1 - 45 of 45 Modify Search
Study
Result count
External references
ID
Name
cis
trans
Markers
Probes
Subjects
PubMed ID
Ind. genotypes
Mol. phenotypes
40FHS_eQTL197590646562228122634phs000342phs000363
41FHS_eGene_leadQTLs1011562228122634phs000342phs000363
46GTEx_Adipose_Subcutaneous101137023715323phs000424.v6phs000424.v6
47GTEx_Adipose_Visceral_Omentum202223423715323phs000424.v6phs000424.v6
48GTEx_Adrenal_Gland202215923715323phs000424.v6phs000424.v6
49GTEx_Artery_Aorta202224723715323phs000424.v6phs000424.v6
50GTEx_Artery_Coronary303314123715323phs000424.v6phs000424.v6
51GTEx_Artery_Tibial303336023715323phs000424.v6phs000424.v6
52GTEx_Brain_Anterior_cingulate_cortex_BA2420229723715323phs000424.v6phs000424.v6
53GTEx_Brain_Caudate_basal_ganglia202213323715323phs000424.v6phs000424.v6
54GTEx_Brain_Cerebellar_Hemisphere101111423715323phs000424.v6phs000424.v6
55GTEx_Brain_Cerebellum101113823715323phs000424.v6phs000424.v6
56GTEx_Brain_Cortex202212723715323phs000424.v6phs000424.v6
57GTEx_Brain_Frontal_Cortex_BA9404411523715323phs000424.v6phs000424.v6
58GTEx_Brain_Hippocampus202210223715323phs000424.v6phs000424.v6
59GTEx_Brain_Hypothalamus404410323715323phs000424.v6phs000424.v6
60GTEx_Brain_Nucleus_accumbens_basal_ganglia202212423715323phs000424.v6phs000424.v6
61GTEx_Brain_Putamen_basal_ganglia202210323715323phs000424.v6phs000424.v6
62GTEx_Breast_Mammary_Tissue303321923715323phs000424.v6phs000424.v6
63GTEx_Cells_EBV-transformed_lymphocytes303313223715323phs000424.v6phs000424.v6
64GTEx_Cells_Transformed_fibroblasts404430523715323phs000424.v6phs000424.v6
65GTEx_Colon_Sigmoid202217323715323phs000424.v6phs000424.v6
66GTEx_Colon_Transverse101120723715323phs000424.v6phs000424.v6
67GTEx_Esophagus_Gastroesophageal_Junction303317523715323phs000424.v6phs000424.v6
68GTEx_Esophagus_Mucosa202232923715323phs000424.v6phs000424.v6
69GTEx_Esophagus_Muscularis202228123715323phs000424.v6phs000424.v6
70GTEx_Heart_Atrial_Appendage202221723715323phs000424.v6phs000424.v6
72GTEx_Liver202213823715323phs000424.v6phs000424.v6
73GTEx_Lung303333823715323phs000424.v6phs000424.v6
74GTEx_Muscle_Skeletal404445423715323phs000424.v6phs000424.v6
75GTEx_Nerve_Tibial202233323715323phs000424.v6phs000424.v6
76GTEx_Ovary404410923715323phs000424.v6phs000424.v6
77GTEx_Pancreas101119423715323phs000424.v6phs000424.v6
78GTEx_Pituitary606612423715323phs000424.v6phs000424.v6
79GTEx_Prostate303312023715323phs000424.v6phs000424.v6
80GTEx_Skin_Not_Sun_Exposed_Suprapubic202226923715323phs000424.v6phs000424.v6
81GTEx_Skin_Sun_Exposed_Lower_leg404438823715323phs000424.v6phs000424.v6
82GTEx_Small_Intestine_Terminal_Ileum303310523715323phs000424.v6phs000424.v6
83GTEx_Spleen303311923715323phs000424.v6phs000424.v6
84GTEx_Stomach505520223715323phs000424.v6phs000424.v6
85GTEx_Testis303319923715323phs000424.v6phs000424.v6
86GTEx_Thyroid404434723715323phs000424.v6phs000424.v6
87GTEx_Uterus50558923715323phs000424.v6phs000424.v6
88GTEx_Vagina40449823715323phs000424.v6phs000424.v6
89GTEx_Whole_Blood101143023715323phs000424.v6phs000424.v6
{ "section": "eqtl", "summary": "1 - 45 of 45"}
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