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Genotype Selection - Genes

677831
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Association Results No data found. Searched by gene IDs retrieved from gene search.
Genes 1 - 1 of 1 Searched by gene names and/or gene IDs.
SNPs 1 - 50 of 1231 Searched by gene symbols retrieved from gene search.
eQTL Data 1 - 4 of 4 Searched by gene IDs retrieved from gene search.
dbGaP Studies No data found.Searched by traits retrieved from page 1 of association results.
Genome View 1 gene over 1 chromosome.
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Get information.

Select broad trait category to limit the items shown in the trait selection.
Select trait for search.  Selection of a trait will limit the trait categories shown above.
Data shown are selected columns matching search criteria, taken directly from NCBI’s GTEx database and browser.  This database aims to provide a central resource to archive and display associations between genetic variation and high-throughput molecular-level phenotypes.  This effort originated with the NIH GTEx roadmap project; however the scope of this resource will be extended to include any available genotype/molecular phenotype datasets.

Get information.Genes

#
Symbol
Description
Location
OMIM
SNORA51small nucleolar RNA, H/ACA box 51 20 : 2,655,067 - 2,655,198
{ "section": "GENE", "summary": "1 - 1 of 1", "retstart": 0, "pageSize": 100, "count": 1, "SEQ": { "chr": [ ["20", 2655067, 2655198] ], "markers": { "20": [ ["SNORA51", "NC_000020.11", 2655067, 2655198, "small nucleolar RNA, H/ACA box 51", "ACA51", 677831] ] }, "unmapped": [ ] } }

Get information.Genome View

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Summary
1 gene searched by gene names and/or gene IDs over 1 chromosome.
SNPGeneCountLocation bps
SNP symbolGene symbol1 SNP or geneLocation symbolless than 2M bps
SNP symbolGene symbol2 - 10 SNPs or genesLocation symbolat least 2M bps
SNP symbolGene symbol11 - 20 SNPs or genes 
SNP symbolGene symbolmore than 20 SNPs or genes
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Get information.Association Results

No association data found.
Modify Search { "section": "assoc", "summary": "No data found.", "mesh": [ ], "genes": [], "snps": [], "page": 1, "call": "BuildGaP", "pageSize": 50, "recCount": 0 }

Get information.SNPs

1 - 50 of 1231 < Previous Next >  Page  GoDownload Modify Search
#
rs#
Location
Function Class
Gene
Diversity
1 rs2146295504 20 : 2,655,686 synonymous_variant, 2KB_upstream_variant, coding_sequence_variant, non_coding_transcript_variant, 500B_downstream_variant, upstream_transcript_variant, downstream_transcript_variant NOP56, SNORD57, SNORD56, SNOR... n/a
2 rs2146295216 20 : 2,655,484 synonymous_variant, 2KB_upstream_variant, coding_sequence_variant, non_coding_transcript_variant, 500B_downstream_variant, upstream_transcript_variant, downstream_transcript_variant NOP56, SNORD57, SNORD56, SNOR... n/a
3 rs2146295211 20 : 2,655,476 missense_variant, 2KB_upstream_variant, coding_sequence_variant, non_coding_transcript_variant, 500B_downstream_variant, upstream_transcript_variant, downstream_transcript_variant NOP56, SNORD57, SNORD56, SNOR... Yes
4 rs2146294134 20 : 2,654,946 2KB_upstream_variant, coding_sequence_variant, non_coding_transcript_variant, splice_donor_variant, upstream_transcript_variant NOP56, SNORD57, SNORD56, SNOR... n/a
5 rs2146293958 20 : 2,654,788 missense_variant, 2KB_upstream_variant, coding_sequence_variant, non_coding_transcript_variant, upstream_transcript_variant NOP56, SNORD56, SNORA51, SNORD86 n/a
6 rs2146293765 20 : 2,654,685 2KB_upstream_variant, intron_variant, 500B_downstream_variant, upstream_transcript_variant, downstream_transcript_variant NOP56, SNORD56, SNORA51, SNOR... n/a
7 rs2146293736 20 : 2,654,670 2KB_upstream_variant, intron_variant, 500B_downstream_variant, upstream_transcript_variant, downstream_transcript_variant NOP56, SNORD56, SNORA51, SNOR... Yes
8 rs2146293613 20 : 2,654,586 2KB_upstream_variant, intron_variant, 500B_downstream_variant, upstream_transcript_variant, downstream_transcript_variant NOP56, SNORA51, SNORD86, SNOR... n/a
9 rs2146293594 20 : 2,654,578 2KB_upstream_variant, intron_variant, 500B_downstream_variant, upstream_transcript_variant, downstream_transcript_variant NOP56, SNORA51, SNORD86, SNOR... n/a
10 rs2146293592 20 : 2,654,576 2KB_upstream_variant, 500B_downstream_variant, splice_donor_variant, upstream_transcript_variant, downstream_transcript_variant NOP56, SNORA51, SNORD86, SNOR... n/a
11 rs2146293025 20 : 2,654,314 2KB_upstream_variant, intron_variant, 500B_downstream_variant, upstream_transcript_variant, downstream_transcript_variant NOP56, SNORA51, SNORD86, SNOR... n/a
12 rs2146292736 20 : 2,654,172 2KB_upstream_variant, upstream_transcript_variant, intron_variant NOP56, SNORA51, SNORD86, SNOR... n/a
13 rs2146292539 20 : 2,654,074 2KB_upstream_variant, upstream_transcript_variant, intron_variant NOP56, SNORA51, SNORD110, LOC... Yes
14 rs2146292443 20 : 2,654,002 2KB_upstream_variant, upstream_transcript_variant, intron_variant NOP56, SNORA51, SNORD110, LOC... n/a
15 rs2146292192 20 : 2,653,906 2KB_upstream_variant, upstream_transcript_variant, intron_variant NOP56, SNORA51, SNORD110, LOC... n/a
16 rs2146292173 20 : 2,653,893 2KB_upstream_variant, upstream_transcript_variant, intron_variant NOP56, SNORA51, SNORD110, LOC... n/a
17 rs2146292147 20 : 2,653,884 2KB_upstream_variant, upstream_transcript_variant, intron_variant NOP56, SNORA51, SNORD110, LOC... n/a
18 rs2146292125 20 : 2,653,870 2KB_upstream_variant, upstream_transcript_variant, intron_variant NOP56, SNORA51, SNORD110, LOC... Yes
19 rs2146291685 20 : 2,653,578 2KB_upstream_variant, upstream_transcript_variant, intron_variant NOP56, SNORA51, SNORD110, LOC... n/a
20 rs2146291511 20 : 2,653,486 2KB_upstream_variant, upstream_transcript_variant, intron_variant NOP56, SNORA51, SNORD110, LOC... Yes
21 rs2146291503 20 : 2,653,482 2KB_upstream_variant, upstream_transcript_variant, intron_variant NOP56, SNORA51, SNORD110, LOC... n/a
22 rs2146291478 20 : 2,653,458 2KB_upstream_variant, upstream_transcript_variant, intron_variant NOP56, SNORA51, SNORD110, LOC... n/a
23 rs2146291433 20 : 2,653,442 2KB_upstream_variant, upstream_transcript_variant, intron_variant NOP56, SNORA51, SNORD110, LOC... n/a
24 rs2146291190 20 : 2,653,336 missense_variant, 2KB_upstream_variant, coding_sequence_variant, non_coding_transcript_variant, 500B_downstream_variant, upstream_transcript_variant, downstream_transcript_variant NOP56, SNORA51, SNORD110, MIR... n/a
25 rs2146291140 20 : 2,653,316 missense_variant, 2KB_upstream_variant, coding_sequence_variant, non_coding_transcript_variant, 500B_downstream_variant, upstream_transcript_variant, downstream_transcript_variant NOP56, SNORA51, SNORD110, MIR... n/a
26 rs2146290912 20 : 2,653,233 2KB_upstream_variant, intron_variant, 500B_downstream_variant, upstream_transcript_variant, downstream_transcript_variant NOP56, SNORA51, SNORD110, MIR... n/a
27 rs2146290851 20 : 2,653,206 2KB_upstream_variant, intron_variant, 500B_downstream_variant, upstream_transcript_variant, downstream_transcript_variant NOP56, SNORA51, SNORD110, MIR... n/a
28 rs2146290575 20 : 2,653,089 2KB_upstream_variant, intron_variant, 500B_downstream_variant, upstream_transcript_variant, downstream_transcript_variant NOP56, SNORA51, SNORD110, MIR... n/a
29 rs2086807516 20 : 2,655,673 2KB_upstream_variant, coding_sequence_variant, non_coding_transcript_variant, downstream_transcript_variant, upstream_transcript_variant, missense_variant, 500B_downstream_variant NOP56, SNORD57, SNORD56, SNOR... Yes
30 rs2086807325 20 : 2,655,662 synonymous_variant, 2KB_upstream_variant, coding_sequence_variant, non_coding_transcript_variant, downstream_transcript_variant, upstream_transcript_variant, 500B_downstream_variant NOP56, SNORD57, SNORD56, SNOR... n/a
31 rs2086806877 20 : 2,655,618 2KB_upstream_variant, coding_sequence_variant, non_coding_transcript_variant, downstream_transcript_variant, upstream_transcript_variant, missense_variant, 500B_downstream_variant NOP56, SNORD57, SNORD56, SNOR... Yes
32 rs2086806484 20 : 2,655,600 2KB_upstream_variant, coding_sequence_variant, non_coding_transcript_variant, downstream_transcript_variant, upstream_transcript_variant, missense_variant, 500B_downstream_variant NOP56, SNORD57, SNORD56, SNOR... Yes
33 rs2086805917 20 : 2,655,555 intron_variant, 2KB_upstream_variant, downstream_transcript_variant, upstream_transcript_variant, 500B_downstream_variant NOP56, SNORD57, SNORD56, SNOR... Yes
34 rs2086805823 20 : 2,655,547 intron_variant, 2KB_upstream_variant, downstream_transcript_variant, upstream_transcript_variant, 500B_downstream_variant NOP56, SNORD57, SNORD56, SNOR... Yes
35 rs2086805793 20 : 2,655,543 intron_variant, 2KB_upstream_variant, downstream_transcript_variant, upstream_transcript_variant, 500B_downstream_variant NOP56, SNORD57, SNORD56, SNOR... Yes
36 rs2086805757 20 : 2,655,541 intron_variant, 2KB_upstream_variant, downstream_transcript_variant, upstream_transcript_variant, 500B_downstream_variant NOP56, SNORD57, SNORD56, SNOR... Yes
37 rs2086805728 20 : 2,655,540 intron_variant, 2KB_upstream_variant, downstream_transcript_variant, upstream_transcript_variant, 500B_downstream_variant NOP56, SNORD57, SNORD56, SNOR... Yes
38 rs2086805634 20 : 2,655,532 intron_variant, 2KB_upstream_variant, downstream_transcript_variant, upstream_transcript_variant, 500B_downstream_variant NOP56, SNORD57, SNORD56, SNOR... Yes
39 rs2086805454 20 : 2,655,513 splice_donor_variant, 2KB_upstream_variant, downstream_transcript_variant, upstream_transcript_variant, 500B_downstream_variant NOP56, SNORD57, SNORD56, SNOR... Yes
40 rs2086805399 20 : 2,655,505 synonymous_variant, 2KB_upstream_variant, coding_sequence_variant, non_coding_transcript_variant, downstream_transcript_variant, upstream_transcript_variant, 500B_downstream_variant NOP56, SNORD57, SNORD56, SNOR... Yes
41 rs2086805358 20 : 2,655,504 2KB_upstream_variant, coding_sequence_variant, non_coding_transcript_variant, downstream_transcript_variant, upstream_transcript_variant, missense_variant, 500B_downstream_variant NOP56, SNORD57, SNORD56, SNOR... Yes
42 rs2086805084 20 : 2,655,472 synonymous_variant, 2KB_upstream_variant, coding_sequence_variant, non_coding_transcript_variant, downstream_transcript_variant, upstream_transcript_variant, 500B_downstream_variant NOP56, SNORD57, SNORD56, SNOR... Yes
43 rs2086804641 20 : 2,655,429 2KB_upstream_variant, inframe_indel, coding_sequence_variant, non_coding_transcript_variant, downstream_transcript_variant, upstream_transcript_variant, 500B_downstream_variant NOP56, SNORD57, SNORD56, SNOR... Yes
44 rs2086804618 20 : 2,655,429 2KB_upstream_variant, coding_sequence_variant, non_coding_transcript_variant, downstream_transcript_variant, upstream_transcript_variant, missense_variant, 500B_downstream_variant NOP56, SNORD57, SNORD56, SNOR... n/a
45 rs2086804272 20 : 2,655,405 2KB_upstream_variant, coding_sequence_variant, non_coding_transcript_variant, downstream_transcript_variant, upstream_transcript_variant, missense_variant, 500B_downstream_variant NOP56, SNORD57, SNORD56, SNOR... Yes
46 rs2086804249 20 : 2,655,403 synonymous_variant, 2KB_upstream_variant, coding_sequence_variant, non_coding_transcript_variant, downstream_transcript_variant, upstream_transcript_variant, 500B_downstream_variant NOP56, SNORD57, SNORD56, SNOR... Yes
47 rs2086803830 20 : 2,655,380 2KB_upstream_variant, coding_sequence_variant, non_coding_transcript_variant, downstream_transcript_variant, upstream_transcript_variant, missense_variant, 500B_downstream_variant NOP56, SNORD57, SNORD56, SNOR... Yes
48 rs2086803147 20 : 2,655,334 synonymous_variant, 2KB_upstream_variant, coding_sequence_variant, non_coding_transcript_variant, downstream_transcript_variant, upstream_transcript_variant, 500B_downstream_variant NOP56, SNORD57, SNORD56, SNOR... Yes
49 rs2086803123 20 : 2,655,331 2KB_upstream_variant, coding_sequence_variant, non_coding_transcript_variant, downstream_transcript_variant, upstream_transcript_variant, stop_gained, 500B_downstream_variant NOP56, SNORD57, SNORD56, SNOR... Yes
50 rs2086803036 20 : 2,655,323 2KB_upstream_variant, downstream_transcript_variant, upstream_transcript_variant, splice_acceptor_variant, 500B_downstream_variant NOP56, SNORD57, SNORD56, SNOR... Yes
{ "section": "SNP", "summary": "1 - 50 of 1231", "genes": [], "retstart": 0, "pageSize": 50, "count": 1231, "SEQ": { "chr": [ ], "markers": { }, "unmapped": [ ] } }

Get information.eQTL Data

gap572635.kquees.asia80gapphegenihttps://572635.kquees.asia/gaphttps://572635.kquees.asiahttps://572635.kquees.asia/gap/phegeni/gaphttps://572635.kquees.asia/gap/phegeni/phegenitrueCE8B8CA0778A8A31_1164SID/projects/dbGap/Epiview/EpiView@4.17offeQTLTable_LeQTLTable_Lgapgap150677831 N4IgDgTgpgbg mAFgSwCYgFwgMIFEAcAQvtgIIAMA7JfpQGwDMpAjOW wCwnmfO4A6ALZw6IAL5A===
1 - 4 of 4 Modify Search
Study
Result count
External references
ID
Name
cis
trans
Markers
Probes
Subjects
PubMed ID
Ind. genotypes
Mol. phenotypes
40FHS_eQTL0212562228122634phs000342phs000363
49GTEx_Artery_Aorta101124723715323phs000424.v6phs000424.v6
76GTEx_Ovary101110923715323phs000424.v6phs000424.v6
85GTEx_Testis101119923715323phs000424.v6phs000424.v6
{ "section": "eqtl", "summary": "1 - 4 of 4"}

Get information.dbGaP Studies

No dbGaP study data found.
Modify Search { "section": "GAP", "summary": "No data found.", "retstart": 0, "pageSize": 50, "count": "" }
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