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Genotype Selection - Genes

619518
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Association Results 1 - 2 of 2 Searched by gene IDs retrieved from gene search.
Genes 1 - 1 of 1 Searched by gene names and/or gene IDs.
SNPs 1 - 50 of 2286 Searched by gene symbols retrieved from gene search.
eQTL Data 1 - 45 of 45 Searched by gene IDs retrieved from gene search.
dbGaP Studies 1 - 8 of 8Searched by traits retrieved from association results.
Genome View 1 gene over 1 chromosome.
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Select broad trait category to limit the items shown in the trait selection.
Select trait for search.  Selection of a trait will limit the trait categories shown above.
Data shown are selected columns matching search criteria, taken directly from NCBI’s GTEx database and browser.  This database aims to provide a central resource to archive and display associations between genetic variation and high-throughput molecular-level phenotypes.  This effort originated with the NIH GTEx roadmap project; however the scope of this resource will be extended to include any available genotype/molecular phenotype datasets.

Get information.Genes

#
Symbol
Description
Location
OMIM
SSBP3-AS1SSBP3 antisense RNA 1 1 : 54,236,443 - 54,239,063
{ "section": "GENE", "summary": "1 - 1 of 1", "retstart": 0, "pageSize": 100, "count": 1, "SEQ": { "chr": [ ["1", 54236443, 54239063] ], "markers": { "1": [ ["SSBP3-AS1", "NC_000001.11", 54236443, 54239063, "SSBP3 antisense RNA 1", "C1orf191, MST128, MSTP128", 619518] ] }, "unmapped": [ ] } }

Get information.Genome View

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Summary
1 gene searched by gene names and/or gene IDs over 1 chromosome.
SNPGeneCountLocation bps
SNP symbolGene symbol1 SNP or geneLocation symbolless than 2M bps
SNP symbolGene symbol2 - 10 SNPs or genesLocation symbolat least 2M bps
SNP symbolGene symbol11 - 20 SNPs or genes 
SNP symbolGene symbolmore than 20 SNPs or genes
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Get information.Association Results

#
  Trait  
rs #
  Context  
  Gene  
  Location  
  P-value  
  Source  
  Study  
Population
  PubMed  
1 Food Hypersensitivity rs12121623 intergenic SSBP3-AS1, TALDO1P1 1 : 54,465,723 3.000 x 10-7 NHGRI European 25710614
2 Child Development Disorders, Pervasive rs4927134 intergenic SSBP3-AS1, TALDO1P1 1 : 54,518,434 7.480 x 10-6 dbGaP phs000267 European
{ "section": "assoc", "summary": "1 - 2 of 2", "mesh": [ "Child Development Disorders, Pervasive", "Food Hypersensitivity" ], "genes": [6889, 619518], "snps": [4927134, 12121623], "page": 1, "call": "BuildGaP", "pageSize": 50, "recCount": 2 }

Get information.SNPs

1 - 50 of 2286 < Previous Next >  Page  GoDownload Modify Search
#
rs#
Location
Function Class
Gene
Diversity
1 rs2100627184 1 : 54,239,558 500B_downstream_variant, intron_variant, downstream_transcript_variant SSBP3, SSBP3-AS1 n/a
2 rs2100626778 1 : 54,239,516 500B_downstream_variant, intron_variant, downstream_transcript_variant SSBP3, SSBP3-AS1 n/a
3 rs2100626445 1 : 54,239,481 500B_downstream_variant, intron_variant, downstream_transcript_variant SSBP3, SSBP3-AS1 n/a
4 rs2100624693 1 : 54,239,271 500B_downstream_variant, intron_variant, downstream_transcript_variant SSBP3, SSBP3-AS1 Yes
5 rs2100621736 1 : 54,238,933 intron_variant, non_coding_transcript_variant SSBP3, SSBP3-AS1 Yes
6 rs2100621574 1 : 54,238,921 intron_variant, non_coding_transcript_variant SSBP3, SSBP3-AS1 n/a
7 rs2100621468 1 : 54,238,914 intron_variant, non_coding_transcript_variant SSBP3, SSBP3-AS1 n/a
8 rs2100620999 1 : 54,238,873 intron_variant, non_coding_transcript_variant SSBP3, SSBP3-AS1 Yes
9 rs2100620764 1 : 54,238,839 intron_variant, non_coding_transcript_variant SSBP3, SSBP3-AS1 Yes
10 rs2100620487 1 : 54,238,808 intron_variant, non_coding_transcript_variant SSBP3, SSBP3-AS1 Yes
11 rs2100620219 1 : 54,238,789 intron_variant, non_coding_transcript_variant SSBP3, SSBP3-AS1 n/a
12 rs2100620022 1 : 54,238,776 intron_variant, non_coding_transcript_variant SSBP3, SSBP3-AS1 Yes
13 rs2100619885 1 : 54,238,767 intron_variant, non_coding_transcript_variant SSBP3, SSBP3-AS1 Yes
14 rs2100619754 1 : 54,238,752 intron_variant, non_coding_transcript_variant SSBP3, SSBP3-AS1 Yes
15 rs2100619109 1 : 54,238,672 intron_variant, non_coding_transcript_variant SSBP3, SSBP3-AS1 Yes
16 rs2100618779 1 : 54,238,626 intron_variant, non_coding_transcript_variant SSBP3, SSBP3-AS1 n/a
17 rs2100617846 1 : 54,238,496 intron_variant, non_coding_transcript_variant SSBP3, SSBP3-AS1 n/a
18 rs2100616896 1 : 54,238,382 intron_variant, non_coding_transcript_variant SSBP3, SSBP3-AS1 n/a
19 rs2100616570 1 : 54,238,338 intron_variant, non_coding_transcript_variant SSBP3, SSBP3-AS1 n/a
20 rs2100616532 1 : 54,238,335 intron_variant, non_coding_transcript_variant SSBP3, SSBP3-AS1 n/a
21 rs2100616517 1 : 54,238,334 intron_variant, non_coding_transcript_variant SSBP3, SSBP3-AS1 n/a
22 rs2100616378 1 : 54,238,315 intron_variant, non_coding_transcript_variant SSBP3, SSBP3-AS1 n/a
23 rs2100616021 1 : 54,238,273 intron_variant, non_coding_transcript_variant SSBP3, SSBP3-AS1 Yes
24 rs2100615697 1 : 54,238,240 intron_variant, non_coding_transcript_variant SSBP3, SSBP3-AS1 n/a
25 rs2100615632 1 : 54,238,235 intron_variant, non_coding_transcript_variant SSBP3, SSBP3-AS1 n/a
26 rs2100614857 1 : 54,238,146 intron_variant, non_coding_transcript_variant SSBP3, SSBP3-AS1 n/a
27 rs2100614653 1 : 54,238,117 intron_variant, non_coding_transcript_variant SSBP3, SSBP3-AS1 Yes
28 rs2100613759 1 : 54,237,996 intron_variant, non_coding_transcript_variant SSBP3, SSBP3-AS1 Yes
29 rs2100613669 1 : 54,237,977 intron_variant, non_coding_transcript_variant SSBP3, SSBP3-AS1 n/a
30 rs2100612963 1 : 54,237,850 intron_variant, non_coding_transcript_variant SSBP3, SSBP3-AS1 Yes
31 rs2100612596 1 : 54,237,807 intron_variant, non_coding_transcript_variant SSBP3, SSBP3-AS1 n/a
32 rs2100612188 1 : 54,237,748 intron_variant, non_coding_transcript_variant SSBP3, SSBP3-AS1 n/a
33 rs2100612039 1 : 54,237,720 intron_variant, non_coding_transcript_variant SSBP3, SSBP3-AS1 n/a
34 rs2100611720 1 : 54,237,669 intron_variant, non_coding_transcript_variant SSBP3, SSBP3-AS1 n/a
35 rs2100611126 1 : 54,237,579 intron_variant, non_coding_transcript_variant SSBP3, SSBP3-AS1 n/a
36 rs2100610267 1 : 54,237,473 intron_variant, non_coding_transcript_variant SSBP3, SSBP3-AS1 Yes
37 rs2100609694 1 : 54,237,400 intron_variant, non_coding_transcript_variant SSBP3, SSBP3-AS1 n/a
38 rs2100609571 1 : 54,237,391 intron_variant, non_coding_transcript_variant SSBP3, SSBP3-AS1 n/a
39 rs2100609461 1 : 54,237,378 intron_variant, non_coding_transcript_variant SSBP3, SSBP3-AS1 n/a
40 rs2100609344 1 : 54,237,367 intron_variant, non_coding_transcript_variant SSBP3, SSBP3-AS1 Yes
41 rs2100609128 1 : 54,237,347 intron_variant, non_coding_transcript_variant SSBP3, SSBP3-AS1 Yes
42 rs2100609053 1 : 54,237,338 intron_variant, non_coding_transcript_variant SSBP3, SSBP3-AS1 Yes
43 rs2100608605 1 : 54,237,259 intron_variant, non_coding_transcript_variant SSBP3, SSBP3-AS1 Yes
44 rs2100608475 1 : 54,237,249 intron_variant, non_coding_transcript_variant SSBP3, SSBP3-AS1 n/a
45 rs2100608438 1 : 54,237,241 intron_variant, non_coding_transcript_variant SSBP3, SSBP3-AS1 n/a
46 rs2100608392 1 : 54,237,233 intron_variant, non_coding_transcript_variant SSBP3, SSBP3-AS1 Yes
47 rs2100608294 1 : 54,237,224 intron_variant, non_coding_transcript_variant SSBP3, SSBP3-AS1 n/a
48 rs2100607686 1 : 54,237,161 intron_variant, non_coding_transcript_variant SSBP3, SSBP3-AS1 n/a
49 rs2100607649 1 : 54,237,150 intron_variant, non_coding_transcript_variant SSBP3, SSBP3-AS1 n/a
50 rs2100606989 1 : 54,237,046 intron_variant, non_coding_transcript_variant SSBP3, SSBP3-AS1 Yes
{ "section": "SNP", "summary": "1 - 50 of 2286", "genes": [], "retstart": 0, "pageSize": 50, "count": 2286, "SEQ": { "chr": [ ], "markers": { }, "unmapped": [ ] } }

Get information.eQTL Data

gap572635.kquees.asia80gapphegenihttps://572635.kquees.asia/gaphttps://572635.kquees.asiahttps://572635.kquees.asia/gap/phegeni/gaphttps://572635.kquees.asia/gap/phegeni/phegenitrueCE89D931771EA0E1_0059SID/projects/dbGap/Epiview/EpiView@4.17offeQTLTable_LeQTLTable_Lgapgap150619518 GA1.1.1102411828.1735518731GS1.1.1735518730.1.0.1735518730.0.0.0GS1.1.1735518730.1.0.1735518730.0.0.0N4IgDgTgpgbg mAFgSwCYgFwgMIFEAcAnACKEDMAjAOxUW4Bs29FADG x2QEJtkAsAOgC2ceiAC QA==
1 - 45 of 45 Modify Search
Study
Result count
External references
ID
Name
cis
trans
Markers
Probes
Subjects
PubMed ID
Ind. genotypes
Mol. phenotypes
40FHS_eQTL016815562228122634phs000342phs000363
46GTEx_Adipose_Subcutaneous101137023715323phs000424.v6phs000424.v6
47GTEx_Adipose_Visceral_Omentum101123423715323phs000424.v6phs000424.v6
48GTEx_Adrenal_Gland202215923715323phs000424.v6phs000424.v6
49GTEx_Artery_Aorta101124723715323phs000424.v6phs000424.v6
50GTEx_Artery_Coronary101114123715323phs000424.v6phs000424.v6
51GTEx_Artery_Tibial101136023715323phs000424.v6phs000424.v6
52GTEx_Brain_Anterior_cingulate_cortex_BA2410119723715323phs000424.v6phs000424.v6
53GTEx_Brain_Caudate_basal_ganglia101113323715323phs000424.v6phs000424.v6
54GTEx_Brain_Cerebellar_Hemisphere101111423715323phs000424.v6phs000424.v6
55GTEx_Brain_Cerebellum101113823715323phs000424.v6phs000424.v6
56GTEx_Brain_Cortex202212723715323phs000424.v6phs000424.v6
57GTEx_Brain_Frontal_Cortex_BA9101111523715323phs000424.v6phs000424.v6
58GTEx_Brain_Hippocampus101110223715323phs000424.v6phs000424.v6
59GTEx_Brain_Hypothalamus202210323715323phs000424.v6phs000424.v6
60GTEx_Brain_Nucleus_accumbens_basal_ganglia101112423715323phs000424.v6phs000424.v6
61GTEx_Brain_Putamen_basal_ganglia101110323715323phs000424.v6phs000424.v6
62GTEx_Breast_Mammary_Tissue101121923715323phs000424.v6phs000424.v6
63GTEx_Cells_EBV-transformed_lymphocytes101113223715323phs000424.v6phs000424.v6
64GTEx_Cells_Transformed_fibroblasts202230523715323phs000424.v6phs000424.v6
65GTEx_Colon_Sigmoid101117323715323phs000424.v6phs000424.v6
66GTEx_Colon_Transverse202220723715323phs000424.v6phs000424.v6
67GTEx_Esophagus_Gastroesophageal_Junction101117523715323phs000424.v6phs000424.v6
68GTEx_Esophagus_Mucosa101132923715323phs000424.v6phs000424.v6
69GTEx_Esophagus_Muscularis101128123715323phs000424.v6phs000424.v6
70GTEx_Heart_Atrial_Appendage101121723715323phs000424.v6phs000424.v6
71GTEx_Heart_Left_Ventricle101124823715323phs000424.v6phs000424.v6
72GTEx_Liver101113823715323phs000424.v6phs000424.v6
73GTEx_Lung101133823715323phs000424.v6phs000424.v6
74GTEx_Muscle_Skeletal101145423715323phs000424.v6phs000424.v6
75GTEx_Nerve_Tibial101133323715323phs000424.v6phs000424.v6
76GTEx_Ovary101110923715323phs000424.v6phs000424.v6
77GTEx_Pancreas101119423715323phs000424.v6phs000424.v6
78GTEx_Pituitary101112423715323phs000424.v6phs000424.v6
79GTEx_Prostate202212023715323phs000424.v6phs000424.v6
80GTEx_Skin_Not_Sun_Exposed_Suprapubic101126923715323phs000424.v6phs000424.v6
81GTEx_Skin_Sun_Exposed_Lower_leg101138823715323phs000424.v6phs000424.v6
82GTEx_Small_Intestine_Terminal_Ileum101110523715323phs000424.v6phs000424.v6
83GTEx_Spleen101111923715323phs000424.v6phs000424.v6
84GTEx_Stomach101120223715323phs000424.v6phs000424.v6
85GTEx_Testis202219923715323phs000424.v6phs000424.v6
86GTEx_Thyroid101134723715323phs000424.v6phs000424.v6
87GTEx_Uterus10118923715323phs000424.v6phs000424.v6
88GTEx_Vagina10119823715323phs000424.v6phs000424.v6
89GTEx_Whole_Blood101143023715323phs000424.v6phs000424.v6
{ "section": "eqtl", "summary": "1 - 45 of 45"}

Get information.dbGaP Studies

#
Disease
Study Type
Study Name
Participants
Platform
1 Autistic Disorder
Child Development Disorders, Pervasive
Autistic Disorder
Multiplex Families University of Miami Study on Genetics of Autism and Related Disorders (AutismDisorders) 1202
2 Autistic Disorder
Child Development Disorders, Pervasive
Autistic Disorder
Parent-Offspring Trios, Parent-Offspring Quads Sporadic Autism Exomes Reveal a Highly Interconnected Protein Network of De Novo Mutations 617 Roche NimbleGen: SeqCap EZ Human Exome Library v2.0
Roche NimbleGen: SeqCap EZ Human Exome Library v1.0
Illumina: Genome Analyzer IIX
Illumina: HiSeq 2000
3 Allergy and Immunology
Dermatitis, Atopic
Asthma
Food Hypersensitivity
Skin Diseases, Infectious
Allergy and Immunology
Case-Control CARD11 Mutations in Atopic Disease 7 Illumina: HiSeq
Illumina: HiSeq
Thermo Fisher Scientific: Ion Proton
{ "section": "GAP", "summary": "1 - 8 of 8", "retstart": 0, "pageSize": 50, "count": 8 }
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