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Genotype Selection - Genes

60436
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Association Results No data found. Searched by gene IDs retrieved from gene search.
Genes 1 - 1 of 1 Searched by gene names and/or gene IDs.
SNPs 1 - 50 of 9404 Searched by gene symbols retrieved from gene search.
eQTL Data 1 - 47 of 47 Searched by gene IDs retrieved from gene search.
dbGaP Studies No data found.Searched by traits retrieved from page 1 of association results.
Genome View 1 gene over 1 chromosome.
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Get information.

Select broad trait category to limit the items shown in the trait selection.
Select trait for search.  Selection of a trait will limit the trait categories shown above.
Data shown are selected columns matching search criteria, taken directly from NCBI’s GTEx database and browser.  This database aims to provide a central resource to archive and display associations between genetic variation and high-throughput molecular-level phenotypes.  This effort originated with the NIH GTEx roadmap project; however the scope of this resource will be extended to include any available genotype/molecular phenotype datasets.

Get information.Genes

#
Symbol
Description
Location
OMIM
TGIF2TGFB induced factor homeobox 2 20 : 36,573,464 - 36,593,950607294
{ "section": "GENE", "summary": "1 - 1 of 1", "retstart": 0, "pageSize": 100, "count": 1, "SEQ": { "chr": [ ["20", 36573464, 36593950] ], "markers": { "20": [ ["TGIF2", "NC_000020.11", 36573464, 36593950, "TGFB induced factor homeobox 2", "", 60436] ] }, "unmapped": [ ] } }

Get information.Genome View

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Summary
1 gene searched by gene names and/or gene IDs over 1 chromosome.
SNPGeneCountLocation bps
SNP symbolGene symbol1 SNP or geneLocation symbolless than 2M bps
SNP symbolGene symbol2 - 10 SNPs or genesLocation symbolat least 2M bps
SNP symbolGene symbol11 - 20 SNPs or genes 
SNP symbolGene symbolmore than 20 SNPs or genes
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Get information.Association Results

No association data found.
Modify Search { "section": "assoc", "summary": "No data found.", "mesh": [ ], "genes": [], "snps": [], "page": 1, "call": "BuildGaP", "pageSize": 50, "recCount": 0 }

Get information.SNPs

1 - 50 of 9404 < Previous Next >  Page  GoDownload Modify Search
#
rs#
Location
Function Class
Gene
Diversity
1 rs2147945505 20 : 36,594,444 500B_downstream_variant, downstream_transcript_variant, intron_variant TGIF2, TGIF2-RAB5IF n/a
2 rs2147945380 20 : 36,594,244 500B_downstream_variant, downstream_transcript_variant, intron_variant TGIF2, TGIF2-RAB5IF Yes
3 rs2147945363 20 : 36,594,210 500B_downstream_variant, downstream_transcript_variant, intron_variant TGIF2, TGIF2-RAB5IF Yes
4 rs2147945322 20 : 36,594,161 500B_downstream_variant, downstream_transcript_variant, intron_variant TGIF2, TGIF2-RAB5IF Yes
5 rs2147945212 20 : 36,594,020 500B_downstream_variant, downstream_transcript_variant, intron_variant TGIF2, TGIF2-RAB5IF n/a
6 rs2147945067 20 : 36,593,878 intron_variant, 3_prime_UTR_variant TGIF2, TGIF2-RAB5IF n/a
7 rs2147945062 20 : 36,593,874 intron_variant, 3_prime_UTR_variant TGIF2, TGIF2-RAB5IF n/a
8 rs2147944992 20 : 36,593,813 intron_variant, 3_prime_UTR_variant TGIF2, TGIF2-RAB5IF Yes
9 rs2147944933 20 : 36,593,785 intron_variant, 3_prime_UTR_variant TGIF2, TGIF2-RAB5IF n/a
10 rs2147944623 20 : 36,593,510 intron_variant, 3_prime_UTR_variant TGIF2, TGIF2-RAB5IF n/a
11 rs2147944616 20 : 36,593,505 intron_variant, 3_prime_UTR_variant TGIF2, TGIF2-RAB5IF Yes
12 rs2147944514 20 : 36,593,426 intron_variant, 3_prime_UTR_variant TGIF2, TGIF2-RAB5IF Yes
13 rs2147944150 20 : 36,593,169 intron_variant, 3_prime_UTR_variant TGIF2, TGIF2-RAB5IF n/a
14 rs2147944139 20 : 36,593,165 intron_variant, 3_prime_UTR_variant TGIF2, TGIF2-RAB5IF n/a
15 rs2147944114 20 : 36,593,145 intron_variant, 3_prime_UTR_variant TGIF2, TGIF2-RAB5IF n/a
16 rs2147944097 20 : 36,593,109 intron_variant, 3_prime_UTR_variant TGIF2, TGIF2-RAB5IF n/a
17 rs2147943838 20 : 36,592,898 intron_variant, 3_prime_UTR_variant TGIF2, TGIF2-RAB5IF n/a
18 rs2147943815 20 : 36,592,874 intron_variant, 3_prime_UTR_variant TGIF2, TGIF2-RAB5IF Yes
19 rs2147943625 20 : 36,592,764 intron_variant, 3_prime_UTR_variant TGIF2, TGIF2-RAB5IF n/a
20 rs2147943588 20 : 36,592,748 intron_variant, 3_prime_UTR_variant TGIF2, TGIF2-RAB5IF n/a
21 rs2147943553 20 : 36,592,728 intron_variant, 3_prime_UTR_variant TGIF2, TGIF2-RAB5IF n/a
22 rs2147943508 20 : 36,592,654 intron_variant, 3_prime_UTR_variant TGIF2, TGIF2-RAB5IF n/a
23 rs2147943442 20 : 36,592,555 intron_variant, 3_prime_UTR_variant TGIF2, TGIF2-RAB5IF n/a
24 rs2147943376 20 : 36,592,510 intron_variant, 3_prime_UTR_variant TGIF2, TGIF2-RAB5IF n/a
25 rs2147943343 20 : 36,592,471 intron_variant, 3_prime_UTR_variant TGIF2, TGIF2-RAB5IF n/a
26 rs2147943318 20 : 36,592,436 intron_variant, 3_prime_UTR_variant TGIF2, TGIF2-RAB5IF Yes
27 rs2147943186 20 : 36,592,339 intron_variant, 3_prime_UTR_variant TGIF2, TGIF2-RAB5IF n/a
28 rs2147943121 20 : 36,592,250 intron_variant, 3_prime_UTR_variant TGIF2, TGIF2-RAB5IF n/a
29 rs2147943096 20 : 36,592,229 intron_variant, 3_prime_UTR_variant TGIF2, TGIF2-RAB5IF n/a
30 rs2147942930 20 : 36,592,137 intron_variant, 3_prime_UTR_variant TGIF2, TGIF2-RAB5IF Yes
31 rs2147942916 20 : 36,592,125 intron_variant, 3_prime_UTR_variant TGIF2, TGIF2-RAB5IF Yes
32 rs2147942867 20 : 36,592,050 intron_variant, 3_prime_UTR_variant TGIF2, TGIF2-RAB5IF n/a
33 rs2147942847 20 : 36,592,031 intron_variant, 3_prime_UTR_variant TGIF2, TGIF2-RAB5IF n/a
34 rs2147942725 20 : 36,591,939 intron_variant, 3_prime_UTR_variant TGIF2, TGIF2-RAB5IF Yes
35 rs2147942521 20 : 36,591,693 intron_variant, 3_prime_UTR_variant TGIF2, TGIF2-RAB5IF n/a
36 rs2147942241 20 : 36,591,473 intron_variant, 3_prime_UTR_variant TGIF2, TGIF2-RAB5IF Yes
37 rs2147942229 20 : 36,591,463 intron_variant, 3_prime_UTR_variant TGIF2, TGIF2-RAB5IF Yes
38 rs2147942085 20 : 36,591,365 coding_sequence_variant, synonymous_variant, intron_variant TGIF2, TGIF2-RAB5IF n/a
39 rs2147941930 20 : 36,591,233 coding_sequence_variant, synonymous_variant, intron_variant TGIF2, TGIF2-RAB5IF Yes
40 rs2147941549 20 : 36,590,998 coding_sequence_variant, missense_variant, intron_variant TGIF2, TGIF2-RAB5IF n/a
41 rs2147941493 20 : 36,590,948 coding_sequence_variant, synonymous_variant, intron_variant TGIF2, TGIF2-RAB5IF n/a
42 rs2147941377 20 : 36,590,843 intron_variant TGIF2, TGIF2-RAB5IF n/a
43 rs2147941269 20 : 36,590,767 intron_variant TGIF2, TGIF2-RAB5IF Yes
44 rs2147941211 20 : 36,590,729 intron_variant TGIF2, TGIF2-RAB5IF n/a
45 rs2147941047 20 : 36,590,621 intron_variant TGIF2, TGIF2-RAB5IF Yes
46 rs2147941007 20 : 36,590,610 intron_variant TGIF2, TGIF2-RAB5IF n/a
47 rs2147940935 20 : 36,590,552 intron_variant TGIF2, TGIF2-RAB5IF n/a
48 rs2147940878 20 : 36,590,540 intron_variant TGIF2, TGIF2-RAB5IF n/a
49 rs2147940625 20 : 36,590,347 intron_variant TGIF2, TGIF2-RAB5IF n/a
50 rs2147940551 20 : 36,590,308 intron_variant TGIF2, TGIF2-RAB5IF n/a
{ "section": "SNP", "summary": "1 - 50 of 9404", "genes": [], "retstart": 0, "pageSize": 50, "count": 9404, "SEQ": { "chr": [ ], "markers": { }, "unmapped": [ ] } }

Get information.eQTL Data

gap572635.kquees.asia80gapphegenihttps://572635.kquees.asia/gaphttps://572635.kquees.asiahttps://572635.kquees.asia/gap/phegeni/gaphttps://572635.kquees.asia/gap/phegeni/phegenitrueCE8CE54575B37FA1_0377SID/projects/dbGap/Epiview/EpiView@4.17offeQTLTable_LeQTLTable_Lgapgap15060436 GA1.1.856621697.1734031348GS1.1.1734031349.1.1.1734031351.0.0.0GS1.1.1734031348.1.1.1734031351.0.0.0N4IgDgTgpgbg mAFgSwCYgFwgMIFEAceArACxEDsRAQgEzYAMAggIz1vvvPkCc9zJ9AHQBbOADYQAXyA
1 - 47 of 47 Modify Search
Study
Result count
External references
ID
Name
cis
trans
Markers
Probes
Subjects
PubMed ID
Ind. genotypes
Mol. phenotypes
21Abundant Quantitative Trait Loci Exist for DNA Methylation and Gene Expression in Human Brain011115020485568phs000249GSE15745
40FHS_eQTL692191416562228122634phs000342phs000363
41FHS_eGene_leadQTLs0111562228122634phs000342phs000363
46GTEx_Adipose_Subcutaneous101137023715323phs000424.v6phs000424.v6
47GTEx_Adipose_Visceral_Omentum101123423715323phs000424.v6phs000424.v6
48GTEx_Adrenal_Gland101115923715323phs000424.v6phs000424.v6
49GTEx_Artery_Aorta101124723715323phs000424.v6phs000424.v6
50GTEx_Artery_Coronary101114123715323phs000424.v6phs000424.v6
51GTEx_Artery_Tibial101136023715323phs000424.v6phs000424.v6
52GTEx_Brain_Anterior_cingulate_cortex_BA2410119723715323phs000424.v6phs000424.v6
53GTEx_Brain_Caudate_basal_ganglia101113323715323phs000424.v6phs000424.v6
54GTEx_Brain_Cerebellar_Hemisphere101111423715323phs000424.v6phs000424.v6
55GTEx_Brain_Cerebellum101113823715323phs000424.v6phs000424.v6
56GTEx_Brain_Cortex101112723715323phs000424.v6phs000424.v6
57GTEx_Brain_Frontal_Cortex_BA9101111523715323phs000424.v6phs000424.v6
58GTEx_Brain_Hippocampus101110223715323phs000424.v6phs000424.v6
59GTEx_Brain_Hypothalamus101110323715323phs000424.v6phs000424.v6
60GTEx_Brain_Nucleus_accumbens_basal_ganglia101112423715323phs000424.v6phs000424.v6
61GTEx_Brain_Putamen_basal_ganglia101110323715323phs000424.v6phs000424.v6
62GTEx_Breast_Mammary_Tissue101121923715323phs000424.v6phs000424.v6
63GTEx_Cells_EBV-transformed_lymphocytes101113223715323phs000424.v6phs000424.v6
64GTEx_Cells_Transformed_fibroblasts101130523715323phs000424.v6phs000424.v6
65GTEx_Colon_Sigmoid101117323715323phs000424.v6phs000424.v6
66GTEx_Colon_Transverse101120723715323phs000424.v6phs000424.v6
67GTEx_Esophagus_Gastroesophageal_Junction101117523715323phs000424.v6phs000424.v6
68GTEx_Esophagus_Mucosa101132923715323phs000424.v6phs000424.v6
69GTEx_Esophagus_Muscularis101128123715323phs000424.v6phs000424.v6
70GTEx_Heart_Atrial_Appendage101121723715323phs000424.v6phs000424.v6
71GTEx_Heart_Left_Ventricle101124823715323phs000424.v6phs000424.v6
72GTEx_Liver101113823715323phs000424.v6phs000424.v6
73GTEx_Lung101133823715323phs000424.v6phs000424.v6
74GTEx_Muscle_Skeletal101145423715323phs000424.v6phs000424.v6
75GTEx_Nerve_Tibial101133323715323phs000424.v6phs000424.v6
76GTEx_Ovary101110923715323phs000424.v6phs000424.v6
77GTEx_Pancreas101119423715323phs000424.v6phs000424.v6
78GTEx_Pituitary101112423715323phs000424.v6phs000424.v6
79GTEx_Prostate101112023715323phs000424.v6phs000424.v6
80GTEx_Skin_Not_Sun_Exposed_Suprapubic101126923715323phs000424.v6phs000424.v6
81GTEx_Skin_Sun_Exposed_Lower_leg101138823715323phs000424.v6phs000424.v6
82GTEx_Small_Intestine_Terminal_Ileum101110523715323phs000424.v6phs000424.v6
83GTEx_Spleen101111923715323phs000424.v6phs000424.v6
84GTEx_Stomach101120223715323phs000424.v6phs000424.v6
85GTEx_Testis202219923715323phs000424.v6phs000424.v6
86GTEx_Thyroid101134723715323phs000424.v6phs000424.v6
87GTEx_Uterus10118923715323phs000424.v6phs000424.v6
88GTEx_Vagina10119823715323phs000424.v6phs000424.v6
89GTEx_Whole_Blood101143023715323phs000424.v6phs000424.v6
{ "section": "eqtl", "summary": "1 - 47 of 47"}

Get information.dbGaP Studies

No dbGaP study data found.
Modify Search { "section": "GAP", "summary": "No data found.", "retstart": 0, "pageSize": 50, "count": "" }
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