Search Summary
Search Criteria
Genotype Selection - Genes
406997
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Search Results
Association Results | No data found. | Searched by gene IDs retrieved from gene search. |
Genes | 1 - 1 of 1 | Searched by gene names and/or gene IDs. |
SNPs | 1 - 50 of 907 | Searched by gene symbols retrieved from gene search. |
eQTL Data | 1 - 2 of 2 | Searched by gene IDs retrieved from gene search. |
dbGaP Studies | No data found. | Searched by traits retrieved from page 1 of association results. |
Genome View | Retrieving... |
Search Criteria
Select broad trait category to limit the items shown in the trait selection.
Select trait for search. Selection of a trait will limit the trait categories shown above.
Data shown are selected columns matching search criteria, taken directly from NCBI’s GTEx database and browser. This database aims to provide a central resource to archive and display associations between genetic variation and high-throughput molecular-level phenotypes. This effort originated with the NIH GTEx roadmap project; however the scope of this resource will be extended to include any available genotype/molecular phenotype datasets.
Celiac Disease
Gene Search: CDKAL1
Location: MHC region
Genes
# | Symbol | Description | Location | OMIM | ||||||
---|---|---|---|---|---|---|---|---|---|---|
1 | MIR215 | microRNA 215 | 1 | : 220,117,962 - 220,117,853 | 610943 | |||||
| ||||||||||
Association Results
No association data found.
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{
"section": "assoc",
"summary": "No data found.",
"mesh": [
],
"genes": [],
"snps": [],
"page": 1,
"call": "BuildGaP",
"pageSize": 50,
"recCount": 0
}
SNPs
# | rs# | Location | Function Class | Gene | Diversity | |
---|---|---|---|---|---|---|
1 | rs2102828817 | 1 | : 220,119,865 | intron_variant, upstream_transcript_variant, 2KB_upstream_variant | IARS2, MIR194-1, MIR215, LOC1... | n/a |
2 | rs2102828813 | 1 | : 220,119,863 | intron_variant, upstream_transcript_variant, 2KB_upstream_variant | IARS2, MIR194-1, MIR215, LOC1... | Yes |
3 | rs2102828810 | 1 | : 220,119,860 | intron_variant, upstream_transcript_variant, 2KB_upstream_variant | IARS2, MIR194-1, MIR215, LOC1... | n/a |
4 | rs2102828762 | 1 | : 220,119,779 | intron_variant, upstream_transcript_variant, 2KB_upstream_variant | IARS2, MIR194-1, MIR215, LOC1... | n/a |
5 | rs2102828717 | 1 | : 220,119,681 | intron_variant, upstream_transcript_variant, 2KB_upstream_variant | IARS2, MIR194-1, MIR215, LOC1... | n/a |
6 | rs2102828583 | 1 | : 220,119,440 | intron_variant, upstream_transcript_variant, 2KB_upstream_variant | IARS2, MIR194-1, MIR215, LOC1... | n/a |
7 | rs2102828529 | 1 | : 220,119,354 | intron_variant, upstream_transcript_variant, 2KB_upstream_variant | IARS2, MIR194-1, MIR215, LOC1... | Yes |
8 | rs2102828526 | 1 | : 220,119,352 | intron_variant, upstream_transcript_variant, 2KB_upstream_variant | IARS2, MIR194-1, MIR215, LOC1... | Yes |
9 | rs2102828511 | 1 | : 220,119,320 | intron_variant, upstream_transcript_variant, 2KB_upstream_variant | IARS2, MIR194-1, MIR215, LOC1... | n/a |
10 | rs2102828494 | 1 | : 220,119,296 | intron_variant, upstream_transcript_variant, 2KB_upstream_variant | IARS2, MIR194-1, MIR215, LOC1... | n/a |
11 | rs2102828379 | 1 | : 220,119,117 | intron_variant, upstream_transcript_variant, 2KB_upstream_variant | IARS2, MIR194-1, MIR215, LOC1... | Yes |
12 | rs2102828370 | 1 | : 220,119,106 | intron_variant, upstream_transcript_variant, 2KB_upstream_variant, non_coding_transcript_variant | IARS2, MIR194-1, MIR215, LOC1... | Yes |
13 | rs2102828365 | 1 | : 220,119,095 | intron_variant, upstream_transcript_variant, 2KB_upstream_variant, non_coding_transcript_variant | IARS2, MIR194-1, MIR215, LOC1... | Yes |
14 | rs2102828363 | 1 | : 220,119,093 | intron_variant, upstream_transcript_variant, 2KB_upstream_variant, non_coding_transcript_variant | IARS2, MIR194-1, MIR215, LOC1... | Yes |
15 | rs2102828358 | 1 | : 220,119,091 | intron_variant, upstream_transcript_variant, 2KB_upstream_variant, non_coding_transcript_variant | IARS2, MIR194-1, MIR215, LOC1... | Yes |
16 | rs2102828318 | 1 | : 220,119,053 | intron_variant, upstream_transcript_variant, 2KB_upstream_variant, non_coding_transcript_variant | IARS2, MIR194-1, MIR215, LOC1... | Yes |
17 | rs2102828255 | 1 | : 220,118,933 | intron_variant, upstream_transcript_variant, 2KB_upstream_variant | IARS2, MIR194-1, MIR215, LOC1... | n/a |
18 | rs2102828241 | 1 | : 220,118,921 | intron_variant, upstream_transcript_variant, 2KB_upstream_variant | IARS2, MIR194-1, MIR215, LOC1... | n/a |
19 | rs2102828221 | 1 | : 220,118,901 | intron_variant, upstream_transcript_variant, 2KB_upstream_variant | IARS2, MIR194-1, MIR215, LOC1... | n/a |
20 | rs2102828174 | 1 | : 220,118,825 | intron_variant, upstream_transcript_variant, 2KB_upstream_variant | IARS2, MIR194-1, MIR215, LOC1... | Yes |
21 | rs2102828106 | 1 | : 220,118,732 | intron_variant, upstream_transcript_variant, 2KB_upstream_variant | IARS2, MIR194-1, MIR215, LOC1... | Yes |
22 | rs2102828099 | 1 | : 220,118,711 | intron_variant, upstream_transcript_variant, 2KB_upstream_variant | IARS2, MIR194-1, MIR215, LOC1... | n/a |
23 | rs2102828082 | 1 | : 220,118,688 | intron_variant, upstream_transcript_variant, 2KB_upstream_variant | IARS2, MIR194-1, MIR215, LOC1... | n/a |
24 | rs2102828000 | 1 | : 220,118,548 | intron_variant, upstream_transcript_variant, 2KB_upstream_variant | IARS2, MIR194-1, MIR215, LOC1... | n/a |
25 | rs2102827986 | 1 | : 220,118,536 | intron_variant, upstream_transcript_variant, 2KB_upstream_variant | IARS2, MIR194-1, MIR215, LOC1... | n/a |
26 | rs2102827970 | 1 | : 220,118,513 | intron_variant, upstream_transcript_variant, 2KB_upstream_variant | IARS2, MIR194-1, MIR215, LOC1... | n/a |
27 | rs2102827960 | 1 | : 220,118,476 | intron_variant, upstream_transcript_variant, 2KB_upstream_variant | IARS2, MIR194-1, MIR215, LOC1... | n/a |
28 | rs2102827947 | 1 | : 220,118,436 | intron_variant, upstream_transcript_variant, 2KB_upstream_variant | IARS2, MIR194-1, MIR215, LOC1... | n/a |
29 | rs2102827902 | 1 | : 220,118,362 | intron_variant, upstream_transcript_variant, 2KB_upstream_variant | IARS2, MIR194-1, MIR215, LOC1... | n/a |
30 | rs2102827866 | 1 | : 220,118,313 | intron_variant, upstream_transcript_variant, 2KB_upstream_variant | IARS2, MIR194-1, MIR215, LOC1... | Yes |
31 | rs2102827760 | 1 | : 220,118,170 | intron_variant, upstream_transcript_variant, 2KB_upstream_variant, non_coding_transcript_variant | IARS2, MIR194-1, MIR215, LOC1... | Yes |
32 | rs2102827656 | 1 | : 220,118,040 | intron_variant, downstream_transcript_variant, upstream_transcript_variant, 2KB_upstream_variant, 500B_downstream_variant | IARS2, MIR194-1, MIR215, LOC1... | Yes |
33 | rs2102827581 | 1 | : 220,117,942 | intron_variant, downstream_transcript_variant, non_coding_transcript_variant, 500B_downstream_variant | IARS2, MIR194-1, MIR215, LOC1... | n/a |
34 | rs2102827501 | 1 | : 220,117,826 | intron_variant, downstream_transcript_variant, non_coding_transcript_variant, 500B_downstream_variant | IARS2, MIR194-1, MIR215, LOC1... | n/a |
35 | rs2102827378 | 1 | : 220,117,623 | intron_variant, downstream_transcript_variant, 500B_downstream_variant | IARS2, MIR215, LOC124904515 | n/a |
36 | rs2102827353 | 1 | : 220,117,589 | intron_variant, downstream_transcript_variant, 500B_downstream_variant | IARS2, MIR215, LOC124904515 | n/a |
37 | rs2102827249 | 1 | : 220,117,459 | intron_variant, downstream_transcript_variant, 500B_downstream_variant | IARS2, MIR215, LOC124904515 | n/a |
38 | rs2102827192 | 1 | : 220,117,399 | intron_variant, downstream_transcript_variant, 500B_downstream_variant | IARS2, MIR215, LOC124904515 | Yes |
39 | rs1657004127 | 1 | : 220,119,958 | upstream_transcript_variant, intron_variant, 2KB_upstream_variant | IARS2, MIR194-1, MIR215, LOC1... | Yes |
40 | rs1657004083 | 1 | : 220,119,955 | upstream_transcript_variant, intron_variant, 2KB_upstream_variant | IARS2, MIR194-1, MIR215, LOC1... | Yes |
41 | rs1657004010 | 1 | : 220,119,953 | upstream_transcript_variant, intron_variant, 2KB_upstream_variant | IARS2, MIR194-1, MIR215, LOC1... | Yes |
42 | rs1657003963 | 1 | : 220,119,950 | upstream_transcript_variant, intron_variant, 2KB_upstream_variant | IARS2, MIR194-1, MIR215, LOC1... | Yes |
43 | rs1657003615 | 1 | : 220,119,934 | upstream_transcript_variant, intron_variant, 2KB_upstream_variant | IARS2, MIR194-1, MIR215, LOC1... | Yes |
44 | rs1657003465 | 1 | : 220,119,917 | upstream_transcript_variant, intron_variant, 2KB_upstream_variant | IARS2, MIR194-1, MIR215, LOC1... | Yes |
45 | rs1657003353 | 1 | : 220,119,907 | upstream_transcript_variant, intron_variant, 2KB_upstream_variant | IARS2, MIR194-1, MIR215, LOC1... | Yes |
46 | rs1657003296 | 1 | : 220,119,904 | upstream_transcript_variant, intron_variant, 2KB_upstream_variant | IARS2, MIR194-1, MIR215, LOC1... | Yes |
47 | rs1657003231 | 1 | : 220,119,902 | upstream_transcript_variant, intron_variant, 2KB_upstream_variant | IARS2, MIR194-1, MIR215, LOC1... | Yes |
48 | rs1657002978 | 1 | : 220,119,895 | upstream_transcript_variant, intron_variant, 2KB_upstream_variant | IARS2, MIR194-1, MIR215, LOC1... | Yes |
49 | rs1657002519 | 1 | : 220,119,869 | upstream_transcript_variant, intron_variant, 2KB_upstream_variant | IARS2, MIR194-1, MIR215, LOC1... | Yes |
50 | rs1657002459 | 1 | : 220,119,855 | upstream_transcript_variant, intron_variant, 2KB_upstream_variant | IARS2, MIR194-1, MIR215, LOC1... | Yes |
eQTL Data
1 - 2 of 2
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Study | Result count | External references | ||||||||
---|---|---|---|---|---|---|---|---|---|---|
⇩ | ID | Name | cis | trans | Markers | Probes | Subjects | PubMed ID | Ind. genotypes | Mol. phenotypes |
⇩ | 40 | FHS_eQTL | 4 | 5 | 2 | 6 | 5622 | 28122634 | phs000342 | phs000363 |
⇩ | 85 | GTEx_Testis | 1 | 0 | 1 | 1 | 199 | 23715323 | phs000424.v6 | phs000424.v6 |
dbGaP Studies
No dbGaP study data found.
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{
"section": "GAP",
"summary": "No data found.",
"retstart": 0,
"pageSize": 50,
"count": ""
}