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Genotype Selection - Genes

23116
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Association Results 1 - 2 of 2 Searched by gene IDs retrieved from gene search.
Genes 1 - 1 of 1 Searched by gene names and/or gene IDs.
SNPs 1 - 50 of 42138 Searched by gene symbols retrieved from gene search.
eQTL Data 1 - 48 of 48 Searched by gene IDs retrieved from gene search.
dbGaP Studies 1 - 9 of 9Searched by traits retrieved from association results.
Genome View 1 gene over 1 chromosome.
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Get information.

Select broad trait category to limit the items shown in the trait selection.
Select trait for search.  Selection of a trait will limit the trait categories shown above.
Data shown are selected columns matching search criteria, taken directly from NCBI’s GTEx database and browser.  This database aims to provide a central resource to archive and display associations between genetic variation and high-throughput molecular-level phenotypes.  This effort originated with the NIH GTEx roadmap project; however the scope of this resource will be extended to include any available genotype/molecular phenotype datasets.

Get information.Genes

#
Symbol
Description
Location
OMIM
TOGARAM1TOG array regulator of axonemal microtubules 1 14 : 44,962,190 - 45,074,431617618
{ "section": "GENE", "summary": "1 - 1 of 1", "retstart": 0, "pageSize": 100, "count": 1, "SEQ": { "chr": [ ["14", 44962190, 45074431] ], "markers": { "14": [ ["TOGARAM1", "NC_000014.9", 44962190, 45074431, "TOG array regulator of axonemal microtubules 1", "FAM179B, JBTS37, KIAA0423", 23116] ] }, "unmapped": [ ] } }

Get information.Genome View

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Summary
1 gene searched by gene names and/or gene IDs over 1 chromosome.
SNPGeneCountLocation bps
SNP symbolGene symbol1 SNP or geneLocation symbolless than 2M bps
SNP symbolGene symbol2 - 10 SNPs or genesLocation symbolat least 2M bps
SNP symbolGene symbol11 - 20 SNPs or genes 
SNP symbolGene symbolmore than 20 SNPs or genes
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Get information.Association Results

#
  Trait  
rs #
  Context  
  Gene  
  Location  
  P-value  
  Source  
  Study  
Population
  PubMed  
1 Platelet Function Tests rs11850346 intron FAM179B 14 : 44,974,333 1.697 x 10-5 dbGaP phs000375 African American
2 Inflammatory Bowel Diseases rs2899961 intron FAM179B 14 : 45,037,654 4.675 x 10-5 dbGaP phs000130 European
Middle East and North Africa [Arab]
17068223
{ "section": "assoc", "summary": "1 - 2 of 2", "mesh": [ "Inflammatory Bowel Diseases", "Platelet Function Tests" ], "genes": [23116], "snps": [2899961, 11850346], "page": 1, "call": "BuildGaP", "pageSize": 50, "recCount": 2 }

Get information.SNPs

1 - 50 of 42138 < Previous Next >  Page  GoDownload Modify Search
#
rs#
Location
Function Class
Gene
Diversity
1 rs2139018990 14 : 45,074,853 500B_downstream_variant, downstream_transcript_variant TOGARAM1 Yes
2 rs2139018764 14 : 45,074,745 500B_downstream_variant, downstream_transcript_variant TOGARAM1 Yes
3 rs2139017993 14 : 45,074,469 500B_downstream_variant, downstream_transcript_variant TOGARAM1 Yes
4 rs2139017975 14 : 45,074,451 500B_downstream_variant, downstream_transcript_variant TOGARAM1 n/a
5 rs2139017635 14 : 45,074,262 3_prime_UTR_variant, non_coding_transcript_variant, genic_downstream_transcript_variant TOGARAM1 n/a
6 rs2139017603 14 : 45,074,245 3_prime_UTR_variant, non_coding_transcript_variant, genic_downstream_transcript_variant TOGARAM1 n/a
7 rs2139017474 14 : 45,074,197 3_prime_UTR_variant, non_coding_transcript_variant, genic_downstream_transcript_variant TOGARAM1 Yes
8 rs2139017037 14 : 45,073,921 3_prime_UTR_variant, non_coding_transcript_variant, genic_downstream_transcript_variant TOGARAM1 Yes
9 rs2139016999 14 : 45,073,899 3_prime_UTR_variant, non_coding_transcript_variant, genic_downstream_transcript_variant TOGARAM1 Yes
10 rs2139016962 14 : 45,073,879 3_prime_UTR_variant, non_coding_transcript_variant, genic_downstream_transcript_variant TOGARAM1 n/a
11 rs2139016655 14 : 45,073,723 3_prime_UTR_variant, non_coding_transcript_variant, genic_downstream_transcript_variant TOGARAM1 n/a
12 rs2139015807 14 : 45,073,334 coding_sequence_variant, 3_prime_UTR_variant, missense_variant, genic_downstream_transcript_variant, non_coding_transcript_variant TOGARAM1 n/a
13 rs2139015745 14 : 45,073,315 coding_sequence_variant, stop_gained, 3_prime_UTR_variant, genic_downstream_transcript_variant, non_coding_transcript_variant TOGARAM1 Yes
14 rs2139015536 14 : 45,073,208 intron_variant, genic_downstream_transcript_variant TOGARAM1 Yes
15 rs2139015446 14 : 45,073,153 intron_variant, genic_downstream_transcript_variant TOGARAM1 Yes
16 rs2139015360 14 : 45,073,104 intron_variant, genic_downstream_transcript_variant TOGARAM1 n/a
17 rs2139015188 14 : 45,072,986 intron_variant, genic_downstream_transcript_variant TOGARAM1 Yes
18 rs2139015141 14 : 45,072,960 intron_variant, genic_downstream_transcript_variant TOGARAM1 n/a
19 rs2139014909 14 : 45,072,822 intron_variant, genic_downstream_transcript_variant TOGARAM1 n/a
20 rs2139014802 14 : 45,072,763 intron_variant, genic_downstream_transcript_variant TOGARAM1 n/a
21 rs2139014780 14 : 45,072,751 intron_variant, genic_downstream_transcript_variant TOGARAM1 n/a
22 rs2139014643 14 : 45,072,652 intron_variant, genic_downstream_transcript_variant TOGARAM1 n/a
23 rs2139014255 14 : 45,072,450 intron_variant, genic_downstream_transcript_variant TOGARAM1 Yes
24 rs2139013352 14 : 45,071,965 intron_variant, genic_downstream_transcript_variant TOGARAM1 Yes
25 rs2139013203 14 : 45,071,893 intron_variant, genic_downstream_transcript_variant TOGARAM1 Yes
26 rs2139013017 14 : 45,071,831 intron_variant, genic_downstream_transcript_variant TOGARAM1 n/a
27 rs2139012724 14 : 45,071,685 intron_variant, genic_downstream_transcript_variant TOGARAM1 Yes
28 rs2139012267 14 : 45,071,483 intron_variant, genic_downstream_transcript_variant TOGARAM1 Yes
29 rs2139012116 14 : 45,071,405 intron_variant, genic_downstream_transcript_variant TOGARAM1 Yes
30 rs2139012088 14 : 45,071,385 intron_variant, genic_downstream_transcript_variant TOGARAM1 n/a
31 rs2139011966 14 : 45,071,311 intron_variant, genic_downstream_transcript_variant TOGARAM1 Yes
32 rs2139011234 14 : 45,071,011 intron_variant, genic_downstream_transcript_variant TOGARAM1 n/a
33 rs2139011056 14 : 45,070,916 intron_variant, genic_downstream_transcript_variant TOGARAM1 Yes
34 rs2139010731 14 : 45,070,739 intron_variant, genic_downstream_transcript_variant TOGARAM1 Yes
35 rs2139010707 14 : 45,070,732 intron_variant, genic_downstream_transcript_variant TOGARAM1 n/a
36 rs2139010619 14 : 45,070,684 intron_variant, genic_downstream_transcript_variant TOGARAM1 Yes
37 rs2139010506 14 : 45,070,599 intron_variant, genic_downstream_transcript_variant TOGARAM1 n/a
38 rs2139010362 14 : 45,070,522 intron_variant, genic_downstream_transcript_variant TOGARAM1 Yes
39 rs2139010264 14 : 45,070,459 intron_variant, genic_downstream_transcript_variant TOGARAM1 n/a
40 rs2139009994 14 : 45,070,280 intron_variant, genic_downstream_transcript_variant TOGARAM1 n/a
41 rs2139009798 14 : 45,070,179 intron_variant, genic_downstream_transcript_variant TOGARAM1 Yes
42 rs2139009202 14 : 45,069,915 intron_variant, genic_downstream_transcript_variant TOGARAM1 n/a
43 rs2139008895 14 : 45,069,748 intron_variant, genic_downstream_transcript_variant TOGARAM1 Yes
44 rs2139008862 14 : 45,069,721 intron_variant, genic_downstream_transcript_variant TOGARAM1 n/a
45 rs2139008735 14 : 45,069,647 intron_variant, genic_downstream_transcript_variant TOGARAM1 Yes
46 rs2139008687 14 : 45,069,625 intron_variant, genic_downstream_transcript_variant TOGARAM1 Yes
47 rs2139008585 14 : 45,069,553 intron_variant, genic_downstream_transcript_variant TOGARAM1 Yes
48 rs2139008491 14 : 45,069,507 intron_variant, genic_downstream_transcript_variant TOGARAM1 Yes
49 rs2139008412 14 : 45,069,464 intron_variant, genic_downstream_transcript_variant TOGARAM1 n/a
50 rs2139008401 14 : 45,069,452 intron_variant, genic_downstream_transcript_variant TOGARAM1 Yes
{ "section": "SNP", "summary": "1 - 50 of 42138", "genes": [], "retstart": 0, "pageSize": 50, "count": 42138, "SEQ": { "chr": [ ], "markers": { }, "unmapped": [ ] } }

Get information.eQTL Data

gap572635.kquees.asia80gapphegenihttps://572635.kquees.asia/gaphttps://572635.kquees.asiahttps://572635.kquees.asia/gap/phegeni/gaphttps://572635.kquees.asia/gap/phegeni/phegenitrueCE8AD7DE77C3D151_0944SID/projects/dbGap/Epiview/EpiView@4.17offeQTLTable_LeQTLTable_Lgapgap15023116 GA1.1.1839531129.1736195347GS1.1.1736195347.1.0.1736195347.0.0.0N4IgDgTgpgbg mAFgSwCYgFwgMIFEAcAggCIDsxupp2AjAJwAMAzDQ2 0wEJtMBMdAHQBbOADYQAXyA
1 - 48 of 48 Modify Search
Study
Result count
External references
ID
Name
cis
trans
Markers
Probes
Subjects
PubMed ID
Ind. genotypes
Mol. phenotypes
21Abundant Quantitative Trait Loci Exist for DNA Methylation and Gene Expression in Human Brain0124124115020485568phs000249GSE15745
39Transcriptome genetics using second generation sequencing in a Caucasian population10116020220756HapMap3E-MTAB-197,
E-MTAB-198
40FHS_eQTL39776394737562228122634phs000342phs000363
41FHS_eGene_leadQTLs1011562228122634phs000342phs000363
46GTEx_Adipose_Subcutaneous101137023715323phs000424.v6phs000424.v6
47GTEx_Adipose_Visceral_Omentum101123423715323phs000424.v6phs000424.v6
48GTEx_Adrenal_Gland101115923715323phs000424.v6phs000424.v6
49GTEx_Artery_Aorta202224723715323phs000424.v6phs000424.v6
50GTEx_Artery_Coronary101114123715323phs000424.v6phs000424.v6
51GTEx_Artery_Tibial303336023715323phs000424.v6phs000424.v6
52GTEx_Brain_Anterior_cingulate_cortex_BA2410119723715323phs000424.v6phs000424.v6
53GTEx_Brain_Caudate_basal_ganglia101113323715323phs000424.v6phs000424.v6
54GTEx_Brain_Cerebellar_Hemisphere101111423715323phs000424.v6phs000424.v6
55GTEx_Brain_Cerebellum101113823715323phs000424.v6phs000424.v6
56GTEx_Brain_Cortex101112723715323phs000424.v6phs000424.v6
57GTEx_Brain_Frontal_Cortex_BA9202211523715323phs000424.v6phs000424.v6
58GTEx_Brain_Hippocampus101110223715323phs000424.v6phs000424.v6
59GTEx_Brain_Hypothalamus202210323715323phs000424.v6phs000424.v6
60GTEx_Brain_Nucleus_accumbens_basal_ganglia202212423715323phs000424.v6phs000424.v6
61GTEx_Brain_Putamen_basal_ganglia202210323715323phs000424.v6phs000424.v6
62GTEx_Breast_Mammary_Tissue101121923715323phs000424.v6phs000424.v6
63GTEx_Cells_EBV-transformed_lymphocytes101113223715323phs000424.v6phs000424.v6
64GTEx_Cells_Transformed_fibroblasts101130523715323phs000424.v6phs000424.v6
65GTEx_Colon_Sigmoid101117323715323phs000424.v6phs000424.v6
66GTEx_Colon_Transverse101120723715323phs000424.v6phs000424.v6
67GTEx_Esophagus_Gastroesophageal_Junction101117523715323phs000424.v6phs000424.v6
68GTEx_Esophagus_Mucosa202232923715323phs000424.v6phs000424.v6
69GTEx_Esophagus_Muscularis202228123715323phs000424.v6phs000424.v6
70GTEx_Heart_Atrial_Appendage202221723715323phs000424.v6phs000424.v6
71GTEx_Heart_Left_Ventricle101124823715323phs000424.v6phs000424.v6
72GTEx_Liver101113823715323phs000424.v6phs000424.v6
73GTEx_Lung303333823715323phs000424.v6phs000424.v6
74GTEx_Muscle_Skeletal101145423715323phs000424.v6phs000424.v6
75GTEx_Nerve_Tibial303333323715323phs000424.v6phs000424.v6
76GTEx_Ovary202210923715323phs000424.v6phs000424.v6
77GTEx_Pancreas101119423715323phs000424.v6phs000424.v6
78GTEx_Pituitary303312423715323phs000424.v6phs000424.v6
79GTEx_Prostate101112023715323phs000424.v6phs000424.v6
80GTEx_Skin_Not_Sun_Exposed_Suprapubic202226923715323phs000424.v6phs000424.v6
81GTEx_Skin_Sun_Exposed_Lower_leg101138823715323phs000424.v6phs000424.v6
82GTEx_Small_Intestine_Terminal_Ileum101110523715323phs000424.v6phs000424.v6
83GTEx_Spleen202211923715323phs000424.v6phs000424.v6
84GTEx_Stomach202220223715323phs000424.v6phs000424.v6
85GTEx_Testis202219923715323phs000424.v6phs000424.v6
86GTEx_Thyroid101134723715323phs000424.v6phs000424.v6
87GTEx_Uterus10118923715323phs000424.v6phs000424.v6
88GTEx_Vagina10119823715323phs000424.v6phs000424.v6
89GTEx_Whole_Blood101143023715323phs000424.v6phs000424.v6
{ "section": "eqtl", "summary": "1 - 48 of 48"}

Get information.dbGaP Studies

#
Disease
Study Type
Study Name
Participants
Platform
1 Crohn Disease
Colitis, Ulcerative
Inflammatory Bowel Diseases
Crohn Disease
Case-Control NIDDK IBDGC Crohn's Disease Genome-Wide Association Study 1963 Illumina: HumanHap300v1.1
2 Colitis, Ulcerative
Inflammatory Bowel Diseases
Colitis, Ulcerative
Case-Control NIDDK IBD Genetics Consortium Ulcerative Colitis Genome-Wide Association Study 1028 Illumina: HumanHap300v2.0
Illumina: HumanHap550v3.0
3 Crohn Disease
Colitis, Ulcerative
Inflammatory Bowel Diseases
Crohn Disease
Family Genome Wide Association Study in Familial Crohn's Disease 704 Illumina: HumanOmni2.5-Quad
4 Pouchitis
Inflammatory Bowel Diseases
Colitis, Ulcerative
Pouchitis
Longitudinal The Role of the Gut Microbiota in Ulcerative Colitis 50 Roche: 454 GS FLX Titanium
Roche: 454 GS FLX Titanium
5 Inflammatory Bowel Diseases
Crohn Disease
Colitis, Ulcerative
Pouchitis
Adenomatous Polyposis Coli
Inflammatory Bowel Diseases
Case-Control Mount Sinai Hospital (MSH, Toronto, CANADA) pelvic pouch microbiome study 80 Roche: 454 GS FLX Titanium
6 Hypercholesterolemia
Asthma
Arthritis, Rheumatoid
Attention Deficit Disorder with Hyperactivity
Bipolar Disorder
Coronary Disease
Depression
Heart Failure
Inflammatory Bowel Diseases
Multiple Sclerosis
Schizophrenia
Stroke
Hypercholesterolemia
Cross-Sectional eMERGE Clinical Center at Partners HealthCare 4929 Illumina: Infinium Multi-Ethnic Genotyping Array (MEGA) - Consortium Release .v1
7 Inflammatory Bowel Diseases
Crohn Disease
Colitis, Ulcerative
Inflammatory Bowel Diseases
Case Set, Case-Control Inflammatory Bowel Disease Exome Sequencing Study 4626 Illumina: ICE Capture Reagent
Illumina: HiSeq X Ten
{ "section": "GAP", "summary": "1 - 9 of 9", "retstart": 0, "pageSize": 50, "count": 9 }
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