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Genotype Selection - Genes

160287
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Association Results No data found. Searched by gene IDs retrieved from gene search.
Genes 1 - 1 of 1 Searched by gene names and/or gene IDs.
SNPs 1 - 50 of 11616 Searched by gene symbols retrieved from gene search.
eQTL Data 1 - 42 of 42 Searched by gene IDs retrieved from gene search.
dbGaP Studies No data found.Searched by traits retrieved from page 1 of association results.
Genome View 1 gene over 1 chromosome.
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Get information.

Select broad trait category to limit the items shown in the trait selection.
Select trait for search.  Selection of a trait will limit the trait categories shown above.
Data shown are selected columns matching search criteria, taken directly from NCBI’s GTEx database and browser.  This database aims to provide a central resource to archive and display associations between genetic variation and high-throughput molecular-level phenotypes.  This effort originated with the NIH GTEx roadmap project; however the scope of this resource will be extended to include any available genotype/molecular phenotype datasets.

Get information.Genes

#
Symbol
Description
Location
OMIM
LDHAL6Alactate dehydrogenase A like 6A 11 : 18,455,856 - 18,479,601618928
{ "section": "GENE", "summary": "1 - 1 of 1", "retstart": 0, "pageSize": 100, "count": 1, "SEQ": { "chr": [ ["11", 18455856, 18479601] ], "markers": { "11": [ ["LDHAL6A", "NC_000011.10", 18455856, 18479601, "lactate dehydrogenase A like 6A", "LDH6A", 160287] ] }, "unmapped": [ ] } }

Get information.Genome View

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Summary
1 gene searched by gene names and/or gene IDs over 1 chromosome.
SNPGeneCountLocation bps
SNP symbolGene symbol1 SNP or geneLocation symbolless than 2M bps
SNP symbolGene symbol2 - 10 SNPs or genesLocation symbolat least 2M bps
SNP symbolGene symbol11 - 20 SNPs or genes 
SNP symbolGene symbolmore than 20 SNPs or genes
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Get information.Association Results

No association data found.
Modify Search { "section": "assoc", "summary": "No data found.", "mesh": [ ], "genes": [], "snps": [], "page": 1, "call": "BuildGaP", "pageSize": 50, "recCount": 0 }

Get information.SNPs

1 - 50 of 11616 < Previous Next >  Page  GoDownload Modify Search
#
rs#
Location
Function Class
Gene
Diversity
1 rs2133898215 11 : 18,480,049 500B_downstream_variant, downstream_transcript_variant TSG101, LDHAL6A Yes
2 rs2133898085 11 : 18,479,984 500B_downstream_variant, downstream_transcript_variant TSG101, LDHAL6A n/a
3 rs2133897935 11 : 18,479,913 500B_downstream_variant, downstream_transcript_variant TSG101, LDHAL6A Yes
4 rs2133897786 11 : 18,479,826 500B_downstream_variant, downstream_transcript_variant TSG101, LDHAL6A Yes
5 rs2133897690 11 : 18,479,777 500B_downstream_variant, downstream_transcript_variant LDHAL6A n/a
6 rs2133897680 11 : 18,479,774 500B_downstream_variant, downstream_transcript_variant LDHAL6A n/a
7 rs2133897668 11 : 18,479,770 500B_downstream_variant, downstream_transcript_variant LDHAL6A n/a
8 rs2133897660 11 : 18,479,769 500B_downstream_variant, downstream_transcript_variant LDHAL6A n/a
9 rs2133897620 11 : 18,479,742 500B_downstream_variant, downstream_transcript_variant LDHAL6A n/a
10 rs2133897610 11 : 18,479,735 500B_downstream_variant, downstream_transcript_variant LDHAL6A n/a
11 rs2133897590 11 : 18,479,729 500B_downstream_variant, downstream_transcript_variant LDHAL6A n/a
12 rs2133897562 11 : 18,479,699 500B_downstream_variant, downstream_transcript_variant LDHAL6A Yes
13 rs2133897541 11 : 18,479,684 500B_downstream_variant, downstream_transcript_variant LDHAL6A n/a
14 rs2133897478 11 : 18,479,625 500B_downstream_variant, downstream_transcript_variant LDHAL6A n/a
15 rs2133897456 11 : 18,479,618 500B_downstream_variant, downstream_transcript_variant LDHAL6A Yes
16 rs2133897160 11 : 18,479,489 3_prime_UTR_variant LDHAL6A Yes
17 rs2133897080 11 : 18,479,450 3_prime_UTR_variant LDHAL6A n/a
18 rs2133897073 11 : 18,479,449 3_prime_UTR_variant LDHAL6A n/a
19 rs2133897047 11 : 18,479,442 3_prime_UTR_variant LDHAL6A n/a
20 rs2133897024 11 : 18,479,422 3_prime_UTR_variant LDHAL6A Yes
21 rs2133896685 11 : 18,479,294 3_prime_UTR_variant LDHAL6A n/a
22 rs2133896425 11 : 18,479,144 3_prime_UTR_variant LDHAL6A Yes
23 rs2133896027 11 : 18,478,954 3_prime_UTR_variant LDHAL6A n/a
24 rs2133895552 11 : 18,478,751 coding_sequence_variant, missense_variant LDHAL6A n/a
25 rs2133895388 11 : 18,478,705 splice_acceptor_variant LDHAL6A Yes
26 rs2133895334 11 : 18,478,671 intron_variant LDHAL6A Yes
27 rs2133895220 11 : 18,478,601 intron_variant LDHAL6A n/a
28 rs2133894939 11 : 18,478,450 intron_variant LDHAL6A n/a
29 rs2133894933 11 : 18,478,449 intron_variant LDHAL6A n/a
30 rs2133894926 11 : 18,478,448 intron_variant LDHAL6A n/a
31 rs2133894918 11 : 18,478,440 intron_variant LDHAL6A n/a
32 rs2133894879 11 : 18,478,436 intron_variant LDHAL6A Yes
33 rs2133894865 11 : 18,478,431 intron_variant LDHAL6A n/a
34 rs2133894845 11 : 18,478,429 intron_variant LDHAL6A n/a
35 rs2133894609 11 : 18,478,312 intron_variant LDHAL6A Yes
36 rs2133894481 11 : 18,478,233 intron_variant LDHAL6A n/a
37 rs2133894471 11 : 18,478,226 intron_variant LDHAL6A n/a
38 rs2133894403 11 : 18,478,168 intron_variant LDHAL6A Yes
39 rs2133894335 11 : 18,478,126 intron_variant LDHAL6A Yes
40 rs2133894308 11 : 18,478,110 intron_variant LDHAL6A n/a
41 rs2133894135 11 : 18,477,965 intron_variant LDHAL6A n/a
42 rs2133894066 11 : 18,477,900 intron_variant LDHAL6A Yes
43 rs2133894022 11 : 18,477,875 intron_variant LDHAL6A n/a
44 rs2133893966 11 : 18,477,801 intron_variant LDHAL6A n/a
45 rs2133893774 11 : 18,477,721 coding_sequence_variant, missense_variant LDHAL6A n/a
46 rs2133893676 11 : 18,477,697 frameshift_variant, coding_sequence_variant LDHAL6A n/a
47 rs2133893272 11 : 18,477,541 intron_variant LDHAL6A n/a
48 rs2133892897 11 : 18,477,335 intron_variant LDHAL6A n/a
49 rs2133892813 11 : 18,477,280 intron_variant LDHAL6A n/a
50 rs2133892707 11 : 18,477,207 intron_variant LDHAL6A n/a
{ "section": "SNP", "summary": "1 - 50 of 11616", "genes": [], "retstart": 0, "pageSize": 50, "count": 11616, "SEQ": { "chr": [ ], "markers": { }, "unmapped": [ ] } }

Get information.eQTL Data

gap572635.kquees.asia80gapphegenihttps://572635.kquees.asia/gaphttps://572635.kquees.asiahttps://572635.kquees.asia/gap/phegeni/gaphttps://572635.kquees.asia/gap/phegeni/phegenitrueCE88475177AAC1E1_0353SID/projects/dbGap/Epiview/EpiView@4.17offeQTLTable_LeQTLTable_Lgapgap150160287 N4IgDgTgpgbg mAFgSwCYgFwgMIFEAc ALAOwCsAjCSQIICcudADBU2 xQGysUDMFAHQBbOFxABfIA=
1 - 42 of 42 Modify Search
Study
Result count
External references
ID
Name
cis
trans
Markers
Probes
Subjects
PubMed ID
Ind. genotypes
Mol. phenotypes
21Abundant Quantitative Trait Loci Exist for DNA Methylation and Gene Expression in Human Brain1805315020485568phs000249GSE15745
40FHS_eQTL10493791659562228122634phs000342phs000363
42A cross-platform analysis of 14,177 expression quantitative trait loci derived from lymphoblastoid cell lines22022295023345460EGAS00000000137E-MTAB-1428,
E-MTAB-1425
46GTEx_Adipose_Subcutaneous101137023715323phs000424.v6phs000424.v6
47GTEx_Adipose_Visceral_Omentum101123423715323phs000424.v6phs000424.v6
48GTEx_Adrenal_Gland101115923715323phs000424.v6phs000424.v6
49GTEx_Artery_Aorta101124723715323phs000424.v6phs000424.v6
50GTEx_Artery_Coronary202214123715323phs000424.v6phs000424.v6
52GTEx_Brain_Anterior_cingulate_cortex_BA2410119723715323phs000424.v6phs000424.v6
54GTEx_Brain_Cerebellar_Hemisphere101111423715323phs000424.v6phs000424.v6
55GTEx_Brain_Cerebellum202213823715323phs000424.v6phs000424.v6
56GTEx_Brain_Cortex101112723715323phs000424.v6phs000424.v6
57GTEx_Brain_Frontal_Cortex_BA9101111523715323phs000424.v6phs000424.v6
58GTEx_Brain_Hippocampus202210223715323phs000424.v6phs000424.v6
59GTEx_Brain_Hypothalamus101110323715323phs000424.v6phs000424.v6
61GTEx_Brain_Putamen_basal_ganglia202210323715323phs000424.v6phs000424.v6
62GTEx_Breast_Mammary_Tissue101121923715323phs000424.v6phs000424.v6
63GTEx_Cells_EBV-transformed_lymphocytes101113223715323phs000424.v6phs000424.v6
64GTEx_Cells_Transformed_fibroblasts101130523715323phs000424.v6phs000424.v6
65GTEx_Colon_Sigmoid101117323715323phs000424.v6phs000424.v6
66GTEx_Colon_Transverse303320723715323phs000424.v6phs000424.v6
67GTEx_Esophagus_Gastroesophageal_Junction101117523715323phs000424.v6phs000424.v6
68GTEx_Esophagus_Mucosa202232923715323phs000424.v6phs000424.v6
69GTEx_Esophagus_Muscularis202228123715323phs000424.v6phs000424.v6
70GTEx_Heart_Atrial_Appendage101121723715323phs000424.v6phs000424.v6
71GTEx_Heart_Left_Ventricle101124823715323phs000424.v6phs000424.v6
72GTEx_Liver101113823715323phs000424.v6phs000424.v6
73GTEx_Lung303333823715323phs000424.v6phs000424.v6
74GTEx_Muscle_Skeletal303345423715323phs000424.v6phs000424.v6
75GTEx_Nerve_Tibial303333323715323phs000424.v6phs000424.v6
76GTEx_Ovary101110923715323phs000424.v6phs000424.v6
78GTEx_Pituitary101112423715323phs000424.v6phs000424.v6
79GTEx_Prostate202212023715323phs000424.v6phs000424.v6
80GTEx_Skin_Not_Sun_Exposed_Suprapubic201226923715323phs000424.v6phs000424.v6
82GTEx_Small_Intestine_Terminal_Ileum101110523715323phs000424.v6phs000424.v6
83GTEx_Spleen202211923715323phs000424.v6phs000424.v6
84GTEx_Stomach101120223715323phs000424.v6phs000424.v6
85GTEx_Testis202219923715323phs000424.v6phs000424.v6
86GTEx_Thyroid202234723715323phs000424.v6phs000424.v6
87GTEx_Uterus10118923715323phs000424.v6phs000424.v6
88GTEx_Vagina30339823715323phs000424.v6phs000424.v6
89GTEx_Whole_Blood202243023715323phs000424.v6phs000424.v6
{ "section": "eqtl", "summary": "1 - 42 of 42"}

Get information.dbGaP Studies

No dbGaP study data found.
Modify Search { "section": "GAP", "summary": "No data found.", "retstart": 0, "pageSize": 50, "count": "" }
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