Search Summary
Search Criteria
Genotype Selection - Genes
160287
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Search Results
Association Results | No data found. | Searched by gene IDs retrieved from gene search. |
Genes | 1 - 1 of 1 | Searched by gene names and/or gene IDs. |
SNPs | 1 - 50 of 11616 | Searched by gene symbols retrieved from gene search. |
eQTL Data | 1 - 42 of 42 | Searched by gene IDs retrieved from gene search. |
dbGaP Studies | No data found. | Searched by traits retrieved from page 1 of association results. |
Genome View | 1 gene over 1 chromosome. |
Search Criteria
Select broad trait category to limit the items shown in the trait selection.
Select trait for search. Selection of a trait will limit the trait categories shown above.
Data shown are selected columns matching search criteria, taken directly from NCBI’s GTEx database and browser. This database aims to provide a central resource to archive and display associations between genetic variation and high-throughput molecular-level phenotypes. This effort originated with the NIH GTEx roadmap project; however the scope of this resource will be extended to include any available genotype/molecular phenotype datasets.
Celiac Disease
Gene Search: CDKAL1
Location: MHC region
Genes
# | Symbol | Description | Location | OMIM | ||||||
---|---|---|---|---|---|---|---|---|---|---|
1 | LDHAL6A | lactate dehydrogenase A like 6A | 11 | : 18,455,856 - 18,479,601 | 618928 | |||||
| ||||||||||
Association Results
No association data found.
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{
"section": "assoc",
"summary": "No data found.",
"mesh": [
],
"genes": [],
"snps": [],
"page": 1,
"call": "BuildGaP",
"pageSize": 50,
"recCount": 0
}
SNPs
# | rs# | Location | Function Class | Gene | Diversity | |
---|---|---|---|---|---|---|
1 | rs2133898215 | 11 | : 18,480,049 | 500B_downstream_variant, downstream_transcript_variant | TSG101, LDHAL6A | Yes |
2 | rs2133898085 | 11 | : 18,479,984 | 500B_downstream_variant, downstream_transcript_variant | TSG101, LDHAL6A | n/a |
3 | rs2133897935 | 11 | : 18,479,913 | 500B_downstream_variant, downstream_transcript_variant | TSG101, LDHAL6A | Yes |
4 | rs2133897786 | 11 | : 18,479,826 | 500B_downstream_variant, downstream_transcript_variant | TSG101, LDHAL6A | Yes |
5 | rs2133897690 | 11 | : 18,479,777 | 500B_downstream_variant, downstream_transcript_variant | LDHAL6A | n/a |
6 | rs2133897680 | 11 | : 18,479,774 | 500B_downstream_variant, downstream_transcript_variant | LDHAL6A | n/a |
7 | rs2133897668 | 11 | : 18,479,770 | 500B_downstream_variant, downstream_transcript_variant | LDHAL6A | n/a |
8 | rs2133897660 | 11 | : 18,479,769 | 500B_downstream_variant, downstream_transcript_variant | LDHAL6A | n/a |
9 | rs2133897620 | 11 | : 18,479,742 | 500B_downstream_variant, downstream_transcript_variant | LDHAL6A | n/a |
10 | rs2133897610 | 11 | : 18,479,735 | 500B_downstream_variant, downstream_transcript_variant | LDHAL6A | n/a |
11 | rs2133897590 | 11 | : 18,479,729 | 500B_downstream_variant, downstream_transcript_variant | LDHAL6A | n/a |
12 | rs2133897562 | 11 | : 18,479,699 | 500B_downstream_variant, downstream_transcript_variant | LDHAL6A | Yes |
13 | rs2133897541 | 11 | : 18,479,684 | 500B_downstream_variant, downstream_transcript_variant | LDHAL6A | n/a |
14 | rs2133897478 | 11 | : 18,479,625 | 500B_downstream_variant, downstream_transcript_variant | LDHAL6A | n/a |
15 | rs2133897456 | 11 | : 18,479,618 | 500B_downstream_variant, downstream_transcript_variant | LDHAL6A | Yes |
16 | rs2133897160 | 11 | : 18,479,489 | 3_prime_UTR_variant | LDHAL6A | Yes |
17 | rs2133897080 | 11 | : 18,479,450 | 3_prime_UTR_variant | LDHAL6A | n/a |
18 | rs2133897073 | 11 | : 18,479,449 | 3_prime_UTR_variant | LDHAL6A | n/a |
19 | rs2133897047 | 11 | : 18,479,442 | 3_prime_UTR_variant | LDHAL6A | n/a |
20 | rs2133897024 | 11 | : 18,479,422 | 3_prime_UTR_variant | LDHAL6A | Yes |
21 | rs2133896685 | 11 | : 18,479,294 | 3_prime_UTR_variant | LDHAL6A | n/a |
22 | rs2133896425 | 11 | : 18,479,144 | 3_prime_UTR_variant | LDHAL6A | Yes |
23 | rs2133896027 | 11 | : 18,478,954 | 3_prime_UTR_variant | LDHAL6A | n/a |
24 | rs2133895552 | 11 | : 18,478,751 | coding_sequence_variant, missense_variant | LDHAL6A | n/a |
25 | rs2133895388 | 11 | : 18,478,705 | splice_acceptor_variant | LDHAL6A | Yes |
26 | rs2133895334 | 11 | : 18,478,671 | intron_variant | LDHAL6A | Yes |
27 | rs2133895220 | 11 | : 18,478,601 | intron_variant | LDHAL6A | n/a |
28 | rs2133894939 | 11 | : 18,478,450 | intron_variant | LDHAL6A | n/a |
29 | rs2133894933 | 11 | : 18,478,449 | intron_variant | LDHAL6A | n/a |
30 | rs2133894926 | 11 | : 18,478,448 | intron_variant | LDHAL6A | n/a |
31 | rs2133894918 | 11 | : 18,478,440 | intron_variant | LDHAL6A | n/a |
32 | rs2133894879 | 11 | : 18,478,436 | intron_variant | LDHAL6A | Yes |
33 | rs2133894865 | 11 | : 18,478,431 | intron_variant | LDHAL6A | n/a |
34 | rs2133894845 | 11 | : 18,478,429 | intron_variant | LDHAL6A | n/a |
35 | rs2133894609 | 11 | : 18,478,312 | intron_variant | LDHAL6A | Yes |
36 | rs2133894481 | 11 | : 18,478,233 | intron_variant | LDHAL6A | n/a |
37 | rs2133894471 | 11 | : 18,478,226 | intron_variant | LDHAL6A | n/a |
38 | rs2133894403 | 11 | : 18,478,168 | intron_variant | LDHAL6A | Yes |
39 | rs2133894335 | 11 | : 18,478,126 | intron_variant | LDHAL6A | Yes |
40 | rs2133894308 | 11 | : 18,478,110 | intron_variant | LDHAL6A | n/a |
41 | rs2133894135 | 11 | : 18,477,965 | intron_variant | LDHAL6A | n/a |
42 | rs2133894066 | 11 | : 18,477,900 | intron_variant | LDHAL6A | Yes |
43 | rs2133894022 | 11 | : 18,477,875 | intron_variant | LDHAL6A | n/a |
44 | rs2133893966 | 11 | : 18,477,801 | intron_variant | LDHAL6A | n/a |
45 | rs2133893774 | 11 | : 18,477,721 | coding_sequence_variant, missense_variant | LDHAL6A | n/a |
46 | rs2133893676 | 11 | : 18,477,697 | frameshift_variant, coding_sequence_variant | LDHAL6A | n/a |
47 | rs2133893272 | 11 | : 18,477,541 | intron_variant | LDHAL6A | n/a |
48 | rs2133892897 | 11 | : 18,477,335 | intron_variant | LDHAL6A | n/a |
49 | rs2133892813 | 11 | : 18,477,280 | intron_variant | LDHAL6A | n/a |
50 | rs2133892707 | 11 | : 18,477,207 | intron_variant | LDHAL6A | n/a |
eQTL Data
1 - 42 of 42
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{ "section": "eqtl", "summary": "1 - 42 of 42"}
dbGaP Studies
No dbGaP study data found.
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{
"section": "GAP",
"summary": "No data found.",
"retstart": 0,
"pageSize": 50,
"count": ""
}