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Genotype Selection - Genes

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Association Results 1 - 2 of 2 Searched by gene IDs retrieved from gene search.
Genes 1 - 1 of 1 Searched by gene names and/or gene IDs.
SNPs 1 - 50 of 10290 Searched by gene symbols retrieved from gene search.
eQTL Data 1 - 47 of 47 Searched by gene IDs retrieved from gene search.
dbGaP Studies  Retrieving... Searched by traits retrieved from association results.
Genome View  Retrieving... 
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Select broad trait category to limit the items shown in the trait selection.
Select trait for search.  Selection of a trait will limit the trait categories shown above.
Data shown are selected columns matching search criteria, taken directly from NCBI’s GTEx database and browser.  This database aims to provide a central resource to archive and display associations between genetic variation and high-throughput molecular-level phenotypes.  This effort originated with the NIH GTEx roadmap project; however the scope of this resource will be extended to include any available genotype/molecular phenotype datasets.

Get information.Genes

#
Symbol
Description
Location
OMIM
ZFYVE27zinc finger FYVE-type containing 27 10 : 97,737,128 - 97,760,895610243
{ "section": "GENE", "summary": "1 - 1 of 1", "retstart": 0, "pageSize": 100, "count": 1, "SEQ": { "chr": [ ["10", 97737128, 97760895] ], "markers": { "10": [ ["ZFYVE27", "NC_000010.11", 97737128, 97760895, "zinc finger FYVE-type containing 27", "PROTRUDIN, SPG33", 118813] ] }, "unmapped": [ ] } }

Get information.Genome View

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Summary
SNPGeneCountLocation bps
SNP symbolGene symbol1 SNP or geneLocation symbolless than 2M bps
SNP symbolGene symbol2 - 10 SNPs or genesLocation symbolat least 2M bps
SNP symbolGene symbol11 - 20 SNPs or genes 
SNP symbolGene symbolmore than 20 SNPs or genes
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Get information.Association Results

#
  Trait  
rs #
  Context  
  Gene  
  Location  
  P-value  
  Source  
  Study  
Population
  PubMed  
1 Platelet Function Tests rs17108375 intron ZFYVE27 10 : 97,738,366 3.620 x 10-7 dbGaP phs000375 African American
2 Platelet Function Tests rs2297933 nearGene-5 ZFYVE27 10 : 97,737,030 2.110 x 10-6 dbGaP phs000375 African American
{ "section": "assoc", "summary": "1 - 2 of 2", "mesh": [ "Platelet Function Tests" ], "genes": [118813], "snps": [2297933, 17108375], "page": 1, "call": "BuildGaP", "pageSize": 50, "recCount": 2 }

Get information.SNPs

1 - 50 of 10290 < Previous Next >  Page  GoDownload Modify Search
#
rs#
Location
Function Class
Gene
Diversity
1 rs2136463242 10 : 97,761,383 downstream_transcript_variant, 500B_downstream_variant ZFYVE27 Yes
2 rs2136462383 10 : 97,761,320 downstream_transcript_variant, 500B_downstream_variant ZFYVE27 n/a
3 rs2136460115 10 : 97,761,075 downstream_transcript_variant, 500B_downstream_variant ZFYVE27 n/a
4 rs2136459091 10 : 97,760,989 downstream_transcript_variant, 500B_downstream_variant ZFYVE27 n/a
5 rs2136458374 10 : 97,760,942 downstream_transcript_variant, 500B_downstream_variant ZFYVE27 n/a
6 rs2136456890 10 : 97,760,783 non_coding_transcript_variant, 3_prime_UTR_variant, genic_downstream_transcript_variant ZFYVE27 Yes
7 rs2136456088 10 : 97,760,717 non_coding_transcript_variant, 3_prime_UTR_variant, genic_downstream_transcript_variant ZFYVE27 n/a
8 rs2136455958 10 : 97,760,703 non_coding_transcript_variant, 3_prime_UTR_variant, genic_downstream_transcript_variant ZFYVE27 Yes
9 rs2136455392 10 : 97,760,664 non_coding_transcript_variant, 3_prime_UTR_variant, genic_downstream_transcript_variant ZFYVE27 Yes
10 rs2136455026 10 : 97,760,615 non_coding_transcript_variant, 3_prime_UTR_variant, genic_downstream_transcript_variant ZFYVE27 Yes
11 rs2136453879 10 : 97,760,533 non_coding_transcript_variant, 3_prime_UTR_variant, genic_downstream_transcript_variant ZFYVE27 n/a
12 rs2136453531 10 : 97,760,491 non_coding_transcript_variant, 3_prime_UTR_variant, genic_downstream_transcript_variant ZFYVE27 n/a
13 rs2136452682 10 : 97,760,381 non_coding_transcript_variant, 3_prime_UTR_variant, genic_downstream_transcript_variant ZFYVE27 Yes
14 rs2136446840 10 : 97,759,901 non_coding_transcript_variant, 3_prime_UTR_variant, genic_downstream_transcript_variant ZFYVE27 Yes
15 rs2136445999 10 : 97,759,819 non_coding_transcript_variant, 3_prime_UTR_variant, genic_downstream_transcript_variant ZFYVE27 n/a
16 rs2136445931 10 : 97,759,812 non_coding_transcript_variant, 3_prime_UTR_variant, genic_downstream_transcript_variant ZFYVE27 Yes
17 rs2136445537 10 : 97,759,778 non_coding_transcript_variant, 3_prime_UTR_variant, genic_downstream_transcript_variant ZFYVE27 n/a
18 rs2136445512 10 : 97,759,767 non_coding_transcript_variant, 3_prime_UTR_variant, genic_downstream_transcript_variant ZFYVE27 Yes
19 rs2136444631 10 : 97,759,712 non_coding_transcript_variant, 3_prime_UTR_variant, genic_downstream_transcript_variant ZFYVE27 Yes
20 rs2136444525 10 : 97,759,692 non_coding_transcript_variant, 3_prime_UTR_variant, genic_downstream_transcript_variant ZFYVE27 Yes
21 rs2136441506 10 : 97,759,473 non_coding_transcript_variant, 3_prime_UTR_variant, genic_downstream_transcript_variant ZFYVE27 n/a
22 rs2136440872 10 : 97,759,417 non_coding_transcript_variant, 3_prime_UTR_variant, genic_downstream_transcript_variant ZFYVE27 n/a
23 rs2136440580 10 : 97,759,390 non_coding_transcript_variant, 3_prime_UTR_variant, genic_downstream_transcript_variant ZFYVE27 n/a
24 rs2136440407 10 : 97,759,383 non_coding_transcript_variant, 3_prime_UTR_variant, genic_downstream_transcript_variant ZFYVE27 Yes
25 rs2136440243 10 : 97,759,371 non_coding_transcript_variant, 3_prime_UTR_variant, genic_downstream_transcript_variant ZFYVE27 n/a
26 rs2136436009 10 : 97,759,188 intron_variant, genic_downstream_transcript_variant ZFYVE27 n/a
27 rs2136434131 10 : 97,759,128 intron_variant, genic_downstream_transcript_variant ZFYVE27 n/a
28 rs2136433136 10 : 97,759,086 intron_variant, genic_downstream_transcript_variant ZFYVE27 n/a
29 rs2136430045 10 : 97,758,932 intron_variant, genic_downstream_transcript_variant ZFYVE27 n/a
30 rs2136426372 10 : 97,758,796 intron_variant, genic_downstream_transcript_variant ZFYVE27 Yes
31 rs2136424046 10 : 97,758,726 intron_variant, genic_downstream_transcript_variant ZFYVE27 Yes
32 rs2136423997 10 : 97,758,724 intron_variant, genic_downstream_transcript_variant ZFYVE27 n/a
33 rs2136415487 10 : 97,758,481 downstream_transcript_variant, intron_variant, genic_downstream_transcript_variant ZFYVE27 Yes
34 rs2136415409 10 : 97,758,480 downstream_transcript_variant, intron_variant, genic_downstream_transcript_variant ZFYVE27 Yes
35 rs2136415113 10 : 97,758,474 downstream_transcript_variant, intron_variant, genic_downstream_transcript_variant ZFYVE27 Yes
36 rs2136414795 10 : 97,758,469 downstream_transcript_variant, intron_variant, genic_downstream_transcript_variant ZFYVE27 Yes
37 rs2136411736 10 : 97,758,385 downstream_transcript_variant, intron_variant, genic_downstream_transcript_variant ZFYVE27 Yes
38 rs2136411427 10 : 97,758,373 downstream_transcript_variant, intron_variant, genic_downstream_transcript_variant ZFYVE27 Yes
39 rs2136411106 10 : 97,758,361 downstream_transcript_variant, intron_variant, genic_downstream_transcript_variant ZFYVE27 n/a
40 rs2136410452 10 : 97,758,355 downstream_transcript_variant, intron_variant, genic_downstream_transcript_variant ZFYVE27 Yes
41 rs2136409267 10 : 97,758,343 downstream_transcript_variant, intron_variant, genic_downstream_transcript_variant ZFYVE27 Yes
42 rs2136403862 10 : 97,758,249 downstream_transcript_variant, intron_variant, genic_downstream_transcript_variant ZFYVE27 n/a
43 rs2136403738 10 : 97,758,246 downstream_transcript_variant, intron_variant, genic_downstream_transcript_variant ZFYVE27 Yes
44 rs2136402577 10 : 97,758,214 downstream_transcript_variant, intron_variant, genic_downstream_transcript_variant ZFYVE27 Yes
45 rs2136394165 10 : 97,757,971 3_prime_UTR_variant, downstream_transcript_variant, intron_variant, genic_downstream_transcript_variant ZFYVE27 Yes
46 rs2136393756 10 : 97,757,958 3_prime_UTR_variant, downstream_transcript_variant, intron_variant, genic_downstream_transcript_variant ZFYVE27 n/a
47 rs2136393043 10 : 97,757,919 3_prime_UTR_variant, downstream_transcript_variant, intron_variant, genic_downstream_transcript_variant ZFYVE27 n/a
48 rs2136392485 10 : 97,757,906 3_prime_UTR_variant, downstream_transcript_variant, intron_variant, genic_downstream_transcript_variant ZFYVE27 n/a
49 rs2136388543 10 : 97,757,792 downstream_transcript_variant, intron_variant, genic_downstream_transcript_variant ZFYVE27 n/a
50 rs2136388442 10 : 97,757,789 downstream_transcript_variant, intron_variant, genic_downstream_transcript_variant ZFYVE27 n/a
{ "section": "SNP", "summary": "1 - 50 of 10290", "genes": [], "retstart": 0, "pageSize": 50, "count": 10290, "SEQ": { "chr": [ ], "markers": { }, "unmapped": [ ] } }

Get information.eQTL Data

gap572635.kquees.asia80gapphegenihttps://572635.kquees.asia/gaphttps://572635.kquees.asiahttps://572635.kquees.asia/gap/phegeni/gaphttps://572635.kquees.asia/gap/phegeni/phegenitrueCE8CF8F277C61D21_1530SID/projects/dbGap/Epiview/EpiView@4.17offeQTLTable_LeQTLTable_Lgapgap150118813 GA1.1.300326988.1736204747GS1.1.1736204747.1.0.1736204747.0.0.0GS1.1.1736204747.1.0.1736204747.0.0.0N4IgDgTgpgbg mAFgSwCYgFwgMIFEAc2AYvkQEwDsF2ZArLQGwCMADG 7UQIIu0DMAIQB0AWzgMQAXyA===
1 - 47 of 47 Modify Search
Study
Result count
External references
ID
Name
cis
trans
Markers
Probes
Subjects
PubMed ID
Ind. genotypes
Mol. phenotypes
1Population genomics of human gene expression011145-21017873874HapMap_v21GSE6536
40FHS_eQTL8763764829562228122634phs000342phs000363
41FHS_eGene_leadQTLs1011562228122634phs000342phs000363
46GTEx_Adipose_Subcutaneous101137023715323phs000424.v6phs000424.v6
47GTEx_Adipose_Visceral_Omentum101123423715323phs000424.v6phs000424.v6
48GTEx_Adrenal_Gland101115923715323phs000424.v6phs000424.v6
49GTEx_Artery_Aorta101124723715323phs000424.v6phs000424.v6
50GTEx_Artery_Coronary202214123715323phs000424.v6phs000424.v6
51GTEx_Artery_Tibial101136023715323phs000424.v6phs000424.v6
52GTEx_Brain_Anterior_cingulate_cortex_BA2410119723715323phs000424.v6phs000424.v6
53GTEx_Brain_Caudate_basal_ganglia101113323715323phs000424.v6phs000424.v6
54GTEx_Brain_Cerebellar_Hemisphere202211423715323phs000424.v6phs000424.v6
55GTEx_Brain_Cerebellum202213823715323phs000424.v6phs000424.v6
56GTEx_Brain_Cortex101112723715323phs000424.v6phs000424.v6
57GTEx_Brain_Frontal_Cortex_BA9101111523715323phs000424.v6phs000424.v6
58GTEx_Brain_Hippocampus101110223715323phs000424.v6phs000424.v6
59GTEx_Brain_Hypothalamus101110323715323phs000424.v6phs000424.v6
60GTEx_Brain_Nucleus_accumbens_basal_ganglia101112423715323phs000424.v6phs000424.v6
61GTEx_Brain_Putamen_basal_ganglia303310323715323phs000424.v6phs000424.v6
62GTEx_Breast_Mammary_Tissue101121923715323phs000424.v6phs000424.v6
63GTEx_Cells_EBV-transformed_lymphocytes101113223715323phs000424.v6phs000424.v6
64GTEx_Cells_Transformed_fibroblasts101130523715323phs000424.v6phs000424.v6
65GTEx_Colon_Sigmoid101117323715323phs000424.v6phs000424.v6
66GTEx_Colon_Transverse101120723715323phs000424.v6phs000424.v6
67GTEx_Esophagus_Gastroesophageal_Junction101117523715323phs000424.v6phs000424.v6
68GTEx_Esophagus_Mucosa101132923715323phs000424.v6phs000424.v6
69GTEx_Esophagus_Muscularis101128123715323phs000424.v6phs000424.v6
70GTEx_Heart_Atrial_Appendage101121723715323phs000424.v6phs000424.v6
71GTEx_Heart_Left_Ventricle202224823715323phs000424.v6phs000424.v6
72GTEx_Liver101113823715323phs000424.v6phs000424.v6
73GTEx_Lung101133823715323phs000424.v6phs000424.v6
74GTEx_Muscle_Skeletal101145423715323phs000424.v6phs000424.v6
75GTEx_Nerve_Tibial202233323715323phs000424.v6phs000424.v6
76GTEx_Ovary101110923715323phs000424.v6phs000424.v6
77GTEx_Pancreas101119423715323phs000424.v6phs000424.v6
78GTEx_Pituitary202212423715323phs000424.v6phs000424.v6
79GTEx_Prostate101112023715323phs000424.v6phs000424.v6
80GTEx_Skin_Not_Sun_Exposed_Suprapubic202226923715323phs000424.v6phs000424.v6
81GTEx_Skin_Sun_Exposed_Lower_leg101138823715323phs000424.v6phs000424.v6
82GTEx_Small_Intestine_Terminal_Ileum101110523715323phs000424.v6phs000424.v6
83GTEx_Spleen101111923715323phs000424.v6phs000424.v6
84GTEx_Stomach202220223715323phs000424.v6phs000424.v6
85GTEx_Testis101119923715323phs000424.v6phs000424.v6
86GTEx_Thyroid101134723715323phs000424.v6phs000424.v6
87GTEx_Uterus10118923715323phs000424.v6phs000424.v6
88GTEx_Vagina20229823715323phs000424.v6phs000424.v6
89GTEx_Whole_Blood101143023715323phs000424.v6phs000424.v6
{ "section": "eqtl", "summary": "1 - 47 of 47"}
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