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Genotype Selection - Genes

10736
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Association Results 1 - 4 of 4 Searched by gene IDs retrieved from gene search.
Genes 1 - 1 of 1 Searched by gene names and/or gene IDs.
SNPs 1 - 50 of 2999 Searched by gene symbols retrieved from gene search.
eQTL Data 1 - 39 of 39 Searched by gene IDs retrieved from gene search.
dbGaP Studies  Retrieving... Searched by traits retrieved from association results.
Genome View  Retrieving... 
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Select broad trait category to limit the items shown in the trait selection.
Select trait for search.  Selection of a trait will limit the trait categories shown above.
Data shown are selected columns matching search criteria, taken directly from NCBI’s GTEx database and browser.  This database aims to provide a central resource to archive and display associations between genetic variation and high-throughput molecular-level phenotypes.  This effort originated with the NIH GTEx roadmap project; however the scope of this resource will be extended to include any available genotype/molecular phenotype datasets.

Get information.Genes

#
Symbol
Description
Location
OMIM
SIX2SIX homeobox 2 2 : 45,009,452 - 45,005,182604994
{ "section": "GENE", "summary": "1 - 1 of 1", "retstart": 0, "pageSize": 100, "count": 1, "SEQ": { "chr": [ ["2", 45005182, 45009452] ], "markers": { "2": [ ["SIX2", "NC_000002.12", 45005182, 45009452, "SIX homeobox 2", "", 10736] ] }, "unmapped": [ ] } }

Get information.Genome View

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Summary
SNPGeneCountLocation bps
SNP symbolGene symbol1 SNP or geneLocation symbolless than 2M bps
SNP symbolGene symbol2 - 10 SNPs or genesLocation symbolat least 2M bps
SNP symbolGene symbol11 - 20 SNPs or genes 
SNP symbolGene symbolmore than 20 SNPs or genes
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Get information.Association Results

#
  Trait  
rs #
  Context  
  Gene  
  Location  
  P-value  
  Source  
  Study  
Population
  PubMed  
1 Glucose rs895636 intergenic SIX3, SIX2 2 : 44,961,214 3.000 x 10-13 NHGRI East Asian
Asian
25187374
2 Glucose rs895636 intergenic SIX3, SIX2 2 : 44,961,214 1.000 x 10-12 NHGRI East Asian 21909109
3 Body Mass Index rs4952731 intergenic SIX2, LINC01121 2 : 45,025,576 3.750 x 10-5 dbGaP phs000379 European
4 Coronary Artery Disease rs921120 intergenic SIX2, LINC01121 2 : 45,045,902 8.233 x 10-5 dbGaP phs000221 European
{ "section": "assoc", "summary": "1 - 4 of 4", "mesh": [ "Body Mass Index", "Coronary Artery Disease", "Glucose" ], "genes": [6496, 10736, 400952], "snps": [895636, 921120, 4952731], "page": 1, "call": "BuildGaP", "pageSize": 50, "recCount": 4 }

Get information.SNPs

1 - 50 of 2999 < Previous Next >  Page  GoDownload Modify Search
#
rs#
Location
Function Class
Gene
Diversity
1 rs2103722810 2 : 45,011,380 2KB_upstream_variant, upstream_transcript_variant SIX2 n/a
2 rs2103722766 2 : 45,011,349 2KB_upstream_variant, upstream_transcript_variant SIX2 n/a
3 rs2103722634 2 : 45,011,251 2KB_upstream_variant, upstream_transcript_variant SIX2 n/a
4 rs2103722564 2 : 45,011,219 2KB_upstream_variant, upstream_transcript_variant SIX2 Yes
5 rs2103722551 2 : 45,011,203 2KB_upstream_variant, upstream_transcript_variant SIX2 n/a
6 rs2103722479 2 : 45,011,154 2KB_upstream_variant, upstream_transcript_variant SIX2 n/a
7 rs2103722432 2 : 45,011,107 2KB_upstream_variant, upstream_transcript_variant SIX2 n/a
8 rs2103722413 2 : 45,011,091 2KB_upstream_variant, upstream_transcript_variant SIX2 Yes
9 rs2103722325 2 : 45,011,037 2KB_upstream_variant, upstream_transcript_variant SIX2 n/a
10 rs2103722290 2 : 45,011,019 2KB_upstream_variant, upstream_transcript_variant SIX2 n/a
11 rs2103722261 2 : 45,011,000 2KB_upstream_variant, upstream_transcript_variant SIX2 n/a
12 rs2103722021 2 : 45,010,855 2KB_upstream_variant, upstream_transcript_variant SIX2 n/a
13 rs2103721648 2 : 45,010,645 2KB_upstream_variant, upstream_transcript_variant SIX2 n/a
14 rs2103721595 2 : 45,010,612 2KB_upstream_variant, upstream_transcript_variant SIX2 n/a
15 rs2103721533 2 : 45,010,578 2KB_upstream_variant, upstream_transcript_variant SIX2 Yes
16 rs2103721374 2 : 45,010,493 2KB_upstream_variant, upstream_transcript_variant SIX2 Yes
17 rs2103721278 2 : 45,010,439 2KB_upstream_variant, upstream_transcript_variant SIX2 Yes
18 rs2103721011 2 : 45,010,314 2KB_upstream_variant, upstream_transcript_variant SIX2 n/a
19 rs2103720989 2 : 45,010,292 2KB_upstream_variant, upstream_transcript_variant SIX2 Yes
20 rs2103720813 2 : 45,010,197 2KB_upstream_variant, upstream_transcript_variant SIX2 Yes
21 rs2103720524 2 : 45,010,024 2KB_upstream_variant, upstream_transcript_variant SIX2 n/a
22 rs2103720515 2 : 45,010,013 2KB_upstream_variant, upstream_transcript_variant SIX2 n/a
23 rs2103720387 2 : 45,009,944 2KB_upstream_variant, upstream_transcript_variant SIX2 n/a
24 rs2103720333 2 : 45,009,919 2KB_upstream_variant, upstream_transcript_variant SIX2 n/a
25 rs2103720166 2 : 45,009,840 2KB_upstream_variant, upstream_transcript_variant SIX2 n/a
26 rs2103719989 2 : 45,009,756 2KB_upstream_variant, upstream_transcript_variant SIX2 Yes
27 rs2103719865 2 : 45,009,698 2KB_upstream_variant, upstream_transcript_variant SIX2 Yes
28 rs2103719663 2 : 45,009,631 2KB_upstream_variant, upstream_transcript_variant SIX2 Yes
29 rs2103719326 2 : 45,009,509 2KB_upstream_variant, upstream_transcript_variant SIX2 n/a
30 rs2103718955 2 : 45,009,358 5_prime_UTR_variant SIX2 Yes
31 rs2103718906 2 : 45,009,339 5_prime_UTR_variant SIX2 Yes
32 rs2103718830 2 : 45,009,307 5_prime_UTR_variant SIX2 Yes
33 rs2103718808 2 : 45,009,303 5_prime_UTR_variant SIX2 n/a
34 rs2103718778 2 : 45,009,288 5_prime_UTR_variant SIX2 Yes
35 rs2103718549 2 : 45,009,193 5_prime_UTR_variant SIX2 n/a
36 rs2103718510 2 : 45,009,181 5_prime_UTR_variant SIX2 n/a
37 rs2103717510 2 : 45,008,844 missense_variant, coding_sequence_variant SIX2 n/a
38 rs2103717386 2 : 45,008,805 synonymous_variant, coding_sequence_variant SIX2 n/a
39 rs2103717230 2 : 45,008,730 synonymous_variant, coding_sequence_variant SIX2 n/a
40 rs2103716969 2 : 45,008,631 synonymous_variant, coding_sequence_variant SIX2 Yes
41 rs2103716749 2 : 45,008,542 intron_variant SIX2 n/a
42 rs2103716495 2 : 45,008,435 intron_variant SIX2 n/a
43 rs2103716344 2 : 45,008,368 intron_variant SIX2 n/a
44 rs2103715452 2 : 45,007,854 intron_variant SIX2 Yes
45 rs2103715295 2 : 45,007,765 intron_variant SIX2 Yes
46 rs2103715037 2 : 45,007,602 intron_variant SIX2 n/a
47 rs2103714831 2 : 45,007,459 intron_variant SIX2 Yes
48 rs2103714827 2 : 45,007,458 intron_variant SIX2 Yes
49 rs2103714801 2 : 45,007,433 intron_variant SIX2 n/a
50 rs2103714548 2 : 45,007,244 intron_variant SIX2 n/a
{ "section": "SNP", "summary": "1 - 50 of 2999", "genes": [], "retstart": 0, "pageSize": 50, "count": 2999, "SEQ": { "chr": [ ], "markers": { }, "unmapped": [ ] } }

Get information.eQTL Data

gap572635.kquees.asia80gapphegenihttps://572635.kquees.asia/gaphttps://572635.kquees.asiahttps://572635.kquees.asia/gap/phegeni/gaphttps://572635.kquees.asia/gap/phegeni/phegenitrueCE8A0360769ED621_0002SID/projects/dbGap/Epiview/EpiView@4.17offeQTLTable_LeQTLTable_Lgapgap15010736 N4IgDgTgpgbg mAFgSwCYgFwgMIFEAcAggAwDMAbMQOzkCcuAIgCzYCMxHnXxATJzwDoAtnHIgAvkA==
1 - 39 of 39 Modify Search
Study
Result count
External references
ID
Name
cis
trans
Markers
Probes
Subjects
PubMed ID
Ind. genotypes
Mol. phenotypes
40FHS_eQTL068067213562228122634phs000342phs000363
46GTEx_Adipose_Subcutaneous101137023715323phs000424.v6phs000424.v6
47GTEx_Adipose_Visceral_Omentum101123423715323phs000424.v6phs000424.v6
48GTEx_Adrenal_Gland101115923715323phs000424.v6phs000424.v6
49GTEx_Artery_Aorta101124723715323phs000424.v6phs000424.v6
50GTEx_Artery_Coronary101114123715323phs000424.v6phs000424.v6
51GTEx_Artery_Tibial101136023715323phs000424.v6phs000424.v6
53GTEx_Brain_Caudate_basal_ganglia101113323715323phs000424.v6phs000424.v6
54GTEx_Brain_Cerebellar_Hemisphere101111423715323phs000424.v6phs000424.v6
55GTEx_Brain_Cerebellum101113823715323phs000424.v6phs000424.v6
56GTEx_Brain_Cortex101112723715323phs000424.v6phs000424.v6
57GTEx_Brain_Frontal_Cortex_BA9101111523715323phs000424.v6phs000424.v6
58GTEx_Brain_Hippocampus101110223715323phs000424.v6phs000424.v6
59GTEx_Brain_Hypothalamus101110323715323phs000424.v6phs000424.v6
60GTEx_Brain_Nucleus_accumbens_basal_ganglia101112423715323phs000424.v6phs000424.v6
62GTEx_Breast_Mammary_Tissue101121923715323phs000424.v6phs000424.v6
64GTEx_Cells_Transformed_fibroblasts101130523715323phs000424.v6phs000424.v6
65GTEx_Colon_Sigmoid101117323715323phs000424.v6phs000424.v6
66GTEx_Colon_Transverse101120723715323phs000424.v6phs000424.v6
67GTEx_Esophagus_Gastroesophageal_Junction101117523715323phs000424.v6phs000424.v6
68GTEx_Esophagus_Mucosa101132923715323phs000424.v6phs000424.v6
69GTEx_Esophagus_Muscularis101128123715323phs000424.v6phs000424.v6
70GTEx_Heart_Atrial_Appendage101121723715323phs000424.v6phs000424.v6
71GTEx_Heart_Left_Ventricle101124823715323phs000424.v6phs000424.v6
73GTEx_Lung101133823715323phs000424.v6phs000424.v6
74GTEx_Muscle_Skeletal101145423715323phs000424.v6phs000424.v6
75GTEx_Nerve_Tibial101133323715323phs000424.v6phs000424.v6
77GTEx_Pancreas101119423715323phs000424.v6phs000424.v6
78GTEx_Pituitary101112423715323phs000424.v6phs000424.v6
79GTEx_Prostate101112023715323phs000424.v6phs000424.v6
80GTEx_Skin_Not_Sun_Exposed_Suprapubic101126923715323phs000424.v6phs000424.v6
81GTEx_Skin_Sun_Exposed_Lower_leg101138823715323phs000424.v6phs000424.v6
82GTEx_Small_Intestine_Terminal_Ileum101110523715323phs000424.v6phs000424.v6
84GTEx_Stomach101120223715323phs000424.v6phs000424.v6
85GTEx_Testis101119923715323phs000424.v6phs000424.v6
86GTEx_Thyroid101134723715323phs000424.v6phs000424.v6
87GTEx_Uterus10118923715323phs000424.v6phs000424.v6
88GTEx_Vagina10119823715323phs000424.v6phs000424.v6
89GTEx_Whole_Blood101143023715323phs000424.v6phs000424.v6
{ "section": "eqtl", "summary": "1 - 39 of 39"}
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