Search Summary
Search Criteria
Genotype Selection - Genes
10736
Modify Search
Search Results
Association Results | 1 - 4 of 4 | Searched by gene IDs retrieved from gene search. |
Genes | 1 - 1 of 1 | Searched by gene names and/or gene IDs. |
SNPs | 1 - 50 of 2999 | Searched by gene symbols retrieved from gene search. |
eQTL Data | 1 - 39 of 39 | Searched by gene IDs retrieved from gene search. |
dbGaP Studies | Retrieving... | Searched by traits retrieved from association results. |
Genome View | Retrieving... |
Search Criteria
Select broad trait category to limit the items shown in the trait selection.
Select trait for search. Selection of a trait will limit the trait categories shown above.
Data shown are selected columns matching search criteria, taken directly from NCBI’s GTEx database and browser. This database aims to provide a central resource to archive and display associations between genetic variation and high-throughput molecular-level phenotypes. This effort originated with the NIH GTEx roadmap project; however the scope of this resource will be extended to include any available genotype/molecular phenotype datasets.
Celiac Disease
Gene Search: CDKAL1
Location: MHC region
Genes
# | Symbol | Description | Location | OMIM | ||||||
---|---|---|---|---|---|---|---|---|---|---|
1 | SIX2 | SIX homeobox 2 | 2 | : 45,009,452 - 45,005,182 | 604994 | |||||
| ||||||||||
Association Results
# |
Trait |
rs # |
Context |
Gene |
Location |
P-value |
Source |
Study |
Population | PubMed |
|
---|---|---|---|---|---|---|---|---|---|---|---|
1 | Glucose | rs895636 | intergenic | SIX3, SIX2 | 2 | : 44,961,214 | 3.000 x 10-13 | NHGRI | East Asian Asian |
25187374 | |
2 | Glucose | rs895636 | intergenic | SIX3, SIX2 | 2 | : 44,961,214 | 1.000 x 10-12 | NHGRI | East Asian | 21909109 | |
3 | Body Mass Index | rs4952731 | intergenic | SIX2, LINC01121 | 2 | : 45,025,576 | 3.750 x 10-5 | dbGaP | phs000379 | European | |
4 | Coronary Artery Disease | rs921120 | intergenic | SIX2, LINC01121 | 2 | : 45,045,902 | 8.233 x 10-5 | dbGaP | phs000221 | European |
SNPs
# | rs# | Location | Function Class | Gene | Diversity | |
---|---|---|---|---|---|---|
1 | rs2103722810 | 2 | : 45,011,380 | 2KB_upstream_variant, upstream_transcript_variant | SIX2 | n/a |
2 | rs2103722766 | 2 | : 45,011,349 | 2KB_upstream_variant, upstream_transcript_variant | SIX2 | n/a |
3 | rs2103722634 | 2 | : 45,011,251 | 2KB_upstream_variant, upstream_transcript_variant | SIX2 | n/a |
4 | rs2103722564 | 2 | : 45,011,219 | 2KB_upstream_variant, upstream_transcript_variant | SIX2 | Yes |
5 | rs2103722551 | 2 | : 45,011,203 | 2KB_upstream_variant, upstream_transcript_variant | SIX2 | n/a |
6 | rs2103722479 | 2 | : 45,011,154 | 2KB_upstream_variant, upstream_transcript_variant | SIX2 | n/a |
7 | rs2103722432 | 2 | : 45,011,107 | 2KB_upstream_variant, upstream_transcript_variant | SIX2 | n/a |
8 | rs2103722413 | 2 | : 45,011,091 | 2KB_upstream_variant, upstream_transcript_variant | SIX2 | Yes |
9 | rs2103722325 | 2 | : 45,011,037 | 2KB_upstream_variant, upstream_transcript_variant | SIX2 | n/a |
10 | rs2103722290 | 2 | : 45,011,019 | 2KB_upstream_variant, upstream_transcript_variant | SIX2 | n/a |
11 | rs2103722261 | 2 | : 45,011,000 | 2KB_upstream_variant, upstream_transcript_variant | SIX2 | n/a |
12 | rs2103722021 | 2 | : 45,010,855 | 2KB_upstream_variant, upstream_transcript_variant | SIX2 | n/a |
13 | rs2103721648 | 2 | : 45,010,645 | 2KB_upstream_variant, upstream_transcript_variant | SIX2 | n/a |
14 | rs2103721595 | 2 | : 45,010,612 | 2KB_upstream_variant, upstream_transcript_variant | SIX2 | n/a |
15 | rs2103721533 | 2 | : 45,010,578 | 2KB_upstream_variant, upstream_transcript_variant | SIX2 | Yes |
16 | rs2103721374 | 2 | : 45,010,493 | 2KB_upstream_variant, upstream_transcript_variant | SIX2 | Yes |
17 | rs2103721278 | 2 | : 45,010,439 | 2KB_upstream_variant, upstream_transcript_variant | SIX2 | Yes |
18 | rs2103721011 | 2 | : 45,010,314 | 2KB_upstream_variant, upstream_transcript_variant | SIX2 | n/a |
19 | rs2103720989 | 2 | : 45,010,292 | 2KB_upstream_variant, upstream_transcript_variant | SIX2 | Yes |
20 | rs2103720813 | 2 | : 45,010,197 | 2KB_upstream_variant, upstream_transcript_variant | SIX2 | Yes |
21 | rs2103720524 | 2 | : 45,010,024 | 2KB_upstream_variant, upstream_transcript_variant | SIX2 | n/a |
22 | rs2103720515 | 2 | : 45,010,013 | 2KB_upstream_variant, upstream_transcript_variant | SIX2 | n/a |
23 | rs2103720387 | 2 | : 45,009,944 | 2KB_upstream_variant, upstream_transcript_variant | SIX2 | n/a |
24 | rs2103720333 | 2 | : 45,009,919 | 2KB_upstream_variant, upstream_transcript_variant | SIX2 | n/a |
25 | rs2103720166 | 2 | : 45,009,840 | 2KB_upstream_variant, upstream_transcript_variant | SIX2 | n/a |
26 | rs2103719989 | 2 | : 45,009,756 | 2KB_upstream_variant, upstream_transcript_variant | SIX2 | Yes |
27 | rs2103719865 | 2 | : 45,009,698 | 2KB_upstream_variant, upstream_transcript_variant | SIX2 | Yes |
28 | rs2103719663 | 2 | : 45,009,631 | 2KB_upstream_variant, upstream_transcript_variant | SIX2 | Yes |
29 | rs2103719326 | 2 | : 45,009,509 | 2KB_upstream_variant, upstream_transcript_variant | SIX2 | n/a |
30 | rs2103718955 | 2 | : 45,009,358 | 5_prime_UTR_variant | SIX2 | Yes |
31 | rs2103718906 | 2 | : 45,009,339 | 5_prime_UTR_variant | SIX2 | Yes |
32 | rs2103718830 | 2 | : 45,009,307 | 5_prime_UTR_variant | SIX2 | Yes |
33 | rs2103718808 | 2 | : 45,009,303 | 5_prime_UTR_variant | SIX2 | n/a |
34 | rs2103718778 | 2 | : 45,009,288 | 5_prime_UTR_variant | SIX2 | Yes |
35 | rs2103718549 | 2 | : 45,009,193 | 5_prime_UTR_variant | SIX2 | n/a |
36 | rs2103718510 | 2 | : 45,009,181 | 5_prime_UTR_variant | SIX2 | n/a |
37 | rs2103717510 | 2 | : 45,008,844 | missense_variant, coding_sequence_variant | SIX2 | n/a |
38 | rs2103717386 | 2 | : 45,008,805 | synonymous_variant, coding_sequence_variant | SIX2 | n/a |
39 | rs2103717230 | 2 | : 45,008,730 | synonymous_variant, coding_sequence_variant | SIX2 | n/a |
40 | rs2103716969 | 2 | : 45,008,631 | synonymous_variant, coding_sequence_variant | SIX2 | Yes |
41 | rs2103716749 | 2 | : 45,008,542 | intron_variant | SIX2 | n/a |
42 | rs2103716495 | 2 | : 45,008,435 | intron_variant | SIX2 | n/a |
43 | rs2103716344 | 2 | : 45,008,368 | intron_variant | SIX2 | n/a |
44 | rs2103715452 | 2 | : 45,007,854 | intron_variant | SIX2 | Yes |
45 | rs2103715295 | 2 | : 45,007,765 | intron_variant | SIX2 | Yes |
46 | rs2103715037 | 2 | : 45,007,602 | intron_variant | SIX2 | n/a |
47 | rs2103714831 | 2 | : 45,007,459 | intron_variant | SIX2 | Yes |
48 | rs2103714827 | 2 | : 45,007,458 | intron_variant | SIX2 | Yes |
49 | rs2103714801 | 2 | : 45,007,433 | intron_variant | SIX2 | n/a |
50 | rs2103714548 | 2 | : 45,007,244 | intron_variant | SIX2 | n/a |
eQTL Data
1 - 39 of 39
Modify Search
{ "section": "eqtl", "summary": "1 - 39 of 39"}